Guide to the Human Genome
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Name: LOC100288156 Sequence: fasta or formatted (208aa) NCBI GI: 239746122
Description:

PREDICTED: hypothetical protein XP_002344202

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         26           2
 C cysteine            0.5          1           1
 D aspartate           2.4          5           1
 E glutamate           6.2         13           1
 F phenylalanine       1.0          2           1
 G glycine            10.6         22           2
 H histidine           2.9          6           1
 I isoleucine          1.0          2           1
 K lysine              3.8          8           1
 L leucine             6.2         13           1
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline            14.4         30           2
 Q glutamine           2.9          6           1
 R arginine           14.9         31           2
 S serine              8.2         17           2
 T threonine           6.2         13           1
 V valine              1.4          3           1
 W tryptophan          1.4          3           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344202 
LOC100290691          1.000   PREDICTED: hypothetical protein XP_002347934 
LOC100292801          0.990   PREDICTED: hypothetical protein 
MUC7                  0.056   mucin 7, secreted precursor 
MUC7                  0.056   mucin 7, secreted precursor 
MUC7                  0.056   mucin 7, secreted precursor 
FLJ22184              0.054   PREDICTED: hypothetical protein LOC80164 
DNM1                  0.054   dynamin 1 isoform 1 
LOC100131880          0.051   PREDICTED: hypothetical protein 
LOC730254             0.051   PREDICTED: hypothetical protein 
LOC730254             0.051   PREDICTED: hypothetical protein 
BAT2                  0.051   HLA-B associated transcript-2 
LOC100133554          0.049   PREDICTED: hypothetical protein 
LOC100133554          0.049   PREDICTED: hypothetical protein 
EMID1                 0.049   EMI domain containing 1 
LOC100289917          0.049   PREDICTED: hypothetical protein XP_002347096 
ATOH8                 0.049   atonal homolog 8 
SRRM2                 0.049   splicing coactivator subunit SRm300 
CRKRS                 0.046   Cdc2-related kinase, arginine/serine-rich isoform 1...
COL1A1                0.046   alpha 1 type I collagen preproprotein 
ZNF469                0.046   zinc finger protein 469 
DNM1                  0.046   dynamin 1 isoform 2 
SYN1                  0.046   synapsin I isoform Ia 
SYN1                  0.046   synapsin I isoform Ib 
MAP7D1                0.046   MAP7 domain containing 1 
SRRM1                 0.044   serine/arginine repetitive matrix 1 
LOC100288568          0.044   PREDICTED: hypothetical protein XP_002343338 
CASKIN1               0.042   CASK interacting protein 1 
PRICKLE3              0.042   LIM domain only 6 
KIAA1522              0.042   hypothetical protein LOC57648 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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