Guide to the Human Genome
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Name: SH3RF1 Sequence: fasta or formatted (888aa) NCBI GI: 51988887
Description:

SH3 domain containing ring finger 1

Referenced in:

Ring Finger Proteins
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         95           6
 C cysteine            2.3         20           1
 D aspartate           3.6         32           2
 E glutamate           4.6         41           2
 F phenylalanine       2.4         21           2
 G glycine             7.9         70           3
 H histidine           2.1         19           2
 I isoleucine          3.6         32           3
 K lysine              5.2         46           2
 L leucine             8.1         72           2
 M methionine          1.5         13           1
 N asparagine          3.0         27           1
 P proline            10.4         92           4
 Q glutamine           4.4         39           2
 R arginine            4.5         40           2
 S serine             10.5         93           3
 T threonine           6.0         53           2
 V valine              7.3         65           3
 W tryptophan          0.8          7           1
 Y tyrosine            1.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH3 domain containing ring finger 1 
SH3RF3                0.394   SH3 domain containing ring finger 3 
SH3RF2                0.196   SH3 domain containing ring finger 2 
SORBS3                0.065   sorbin and SH3 domain containing 3 isoform 1 
SORBS3                0.065   sorbin and SH3 domain containing 3 isoform 2 
SORBS1                0.041   sorbin and SH3 domain containing 1 isoform 4 
SORBS2                0.040   sorbin and SH3 domain containing 2 isoform 8 
SORBS2                0.040   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.040   sorbin and SH3 domain containing 2 isoform 5 
SORBS2                0.040   sorbin and SH3 domain containing 2 isoform 4 
SORBS2                0.040   sorbin and SH3 domain containing 2 isoform 3 
SORBS2                0.040   sorbin and SH3 domain containing 2 isoform 1 
SORBS2                0.039   sorbin and SH3 domain containing 2 isoform 7 
SORBS2                0.039   sorbin and SH3 domain containing 2 isoform 2 
SORBS1                0.035   sorbin and SH3 domain containing 1 isoform 3 
SH3GL3                0.032   SH3-domain GRB2-like 3 
SORBS1                0.032   sorbin and SH3 domain containing 1 isoform 7 
SORBS1                0.032   sorbin and SH3 domain containing 1 isoform 6 
SORBS1                0.032   sorbin and SH3 domain containing 1 isoform 5 
SORBS1                0.032   sorbin and SH3 domain containing 1 isoform 2 
SORBS1                0.032   sorbin and SH3 domain containing 1 isoform 1 
SH3GL1                0.031   SH3-domain GRB2-like 1 
SH3D19                0.031   SH3 domain containing 19 isoform c 
SH3D19                0.031   SH3 domain containing 19 isoform b 
SH3D19                0.031   SH3 domain containing 19 isoform a 
SH3GL2                0.028   SH3-domain GRB2-like 2 
ITSN2                 0.026   intersectin 2 isoform 3 
ITSN2                 0.026   intersectin 2 isoform 1 
ITSN2                 0.026   intersectin 2 isoform 2 
ITSN1                 0.022   intersectin 1 isoform ITSN-l 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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