Guide to the Human Genome
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Name: LOC100292801 Sequence: fasta or formatted (208aa) NCBI GI: 239757099
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         26           2
 C cysteine            0.5          1           1
 D aspartate           2.4          5           1
 E glutamate           6.2         13           1
 F phenylalanine       1.4          3           1
 G glycine            10.6         22           2
 H histidine           2.9          6           1
 I isoleucine          1.0          2           1
 K lysine              4.3          9           1
 L leucine             6.2         13           1
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline            14.4         30           2
 Q glutamine           2.4          5           1
 R arginine           14.9         31           2
 S serine              7.7         16           2
 T threonine           6.2         13           1
 V valine              1.4          3           1
 W tryptophan          1.4          3           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290691          0.988   PREDICTED: hypothetical protein XP_002347934 
LOC100288156          0.988   PREDICTED: hypothetical protein XP_002344202 
MUC7                  0.056   mucin 7, secreted precursor 
MUC7                  0.056   mucin 7, secreted precursor 
MUC7                  0.056   mucin 7, secreted precursor 
DNM1                  0.056   dynamin 1 isoform 1 
FLJ22184              0.054   PREDICTED: hypothetical protein LOC80164 
BAT2                  0.051   HLA-B associated transcript-2 
LOC730254             0.049   PREDICTED: hypothetical protein 
LOC730254             0.049   PREDICTED: hypothetical protein 
COL1A1                0.049   alpha 1 type I collagen preproprotein 
LOC100131880          0.049   PREDICTED: hypothetical protein 
EMID1                 0.049   EMI domain containing 1 
ATOH8                 0.049   atonal homolog 8 
SRRM1                 0.046   serine/arginine repetitive matrix 1 
DNM1                  0.046   dynamin 1 isoform 2 
KIAA1522              0.044   hypothetical protein LOC57648 
LOC100133554          0.044   PREDICTED: hypothetical protein 
LOC100133554          0.044   PREDICTED: hypothetical protein 
CRKRS                 0.044   Cdc2-related kinase, arginine/serine-rich isoform 1...
PRICKLE3              0.044   LIM domain only 6 
SAMD1                 0.044   sterile alpha motif domain containing 1 
CASKIN1               0.041   CASK interacting protein 1 
ZNF469                0.041   zinc finger protein 469 
SRRM2                 0.041   splicing coactivator subunit SRm300 
MYO15A                0.041   myosin XV 
WASF2                 0.041   WAS protein family, member 2 
SYN1                  0.041   synapsin I isoform Ia 
SYN1                  0.041   synapsin I isoform Ib 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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