Guide to the Human Genome
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Name: LOC644578 Sequence: fasta or formatted (315aa) NCBI GI: 239753842
Description:

PREDICTED: similar to hCG2040199

Not currently referenced in the text

Other entries for this name:
alt prot {315aa} PREDICTED: similar to hCG2040199
alt mRNA {315aa} PREDICTED: similar to hCG2040199
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         28           3
 C cysteine            0.3          1           1
 D aspartate           3.2         10           2
 E glutamate          10.5         33           2
 F phenylalanine       2.2          7           1
 G glycine             6.3         20           2
 H histidine           2.2          7           1
 I isoleucine          2.2          7           1
 K lysine              9.5         30           4
 L leucine             8.6         27           3
 M methionine          2.9          9           2
 N asparagine          4.8         15           1
 P proline             6.7         21           2
 Q glutamine           5.7         18           1
 R arginine            6.3         20           2
 S serine              6.0         19           2
 T threonine           6.0         19           3
 V valine              4.4         14           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.5          8           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040199 
LOC644578             1.000   PREDICTED: similar to hCG2040199 
LOC644578             0.997   PREDICTED: similar to hCG2040199 
LARP1B                0.218   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.218   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.218   La ribonucleoprotein domain family member 2 isoform ...
LARP1                 0.124   la related protein isoform 2 
LARP1                 0.124   la related protein isoform 1 
LARP4                 0.048   c-Mpl binding protein isoform a 
LARP4                 0.048   c-Mpl binding protein isoform c 
LARP4                 0.048   c-Mpl binding protein isoform b 
CMYA5                 0.025   cardiomyopathy associated 5 
LARP6                 0.023   La ribonucleoprotein domain family, member 6 isoform...
SPEG                  0.023   SPEG complex locus 
ZNF828                0.023   zinc finger protein 828 
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
SSB                   0.021   autoantigen La 
PCLO                  0.018   piccolo isoform 2 
PCLO                  0.018   piccolo isoform 1 
PRG4                  0.017   proteoglycan 4 isoform D 
PRG4                  0.017   proteoglycan 4 isoform C 
PRG4                  0.017   proteoglycan 4 isoform B 
PRG4                  0.017   proteoglycan 4 isoform A 
SMTNL1                0.017   smoothelin-like 1 
EP400                 0.017   E1A binding protein p400 
RBBP6                 0.015   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.015   retinoblastoma-binding protein 6 isoform 1 
OGFR                  0.013   opioid growth factor receptor 
NOLC1                 0.013   nucleolar and coiled-body phosphoprotein 1 
MICAL3                0.013   microtubule associated monoxygenase, calponin and L...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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