Guide to the Human Genome
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Name: OTUD7A Sequence: fasta or formatted (926aa) NCBI GI: 18702331
Description:

OTU domain containing 7A

Referenced in:

Ubiquitin and Related Protein Modifications
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4        115          11
 C cysteine            1.7         16           1
 D aspartate           4.8         44           2
 E glutamate           7.5         69           3
 F phenylalanine       2.4         22           1
 G glycine             8.1         75           3
 H histidine           2.6         24           1
 I isoleucine          2.1         19           1
 K lysine              4.9         45           2
 L leucine             8.6         80           3
 M methionine          1.6         15           2
 N asparagine          3.5         32           2
 P proline             6.7         62           2
 Q glutamine           4.0         37           2
 R arginine            8.3         77           4
 S serine              8.3         77           2
 T threonine           4.8         44           2
 V valine              4.5         42           3
 W tryptophan          1.4         13           2
 Y tyrosine            1.9         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   OTU domain containing 7A 
OTUD7B                0.475   zinc finger protein Cezanne 
TNFAIP3               0.080   tumor necrosis factor, alpha-induced protein 3 
ZRANB1                0.050   zinc finger, RAN-binding domain containing 1 protei...
LOC100291825          0.042   PREDICTED: similar to hCG1982161 
LOC100290512          0.042   PREDICTED: hypothetical protein XP_002347561 
LOC100288637          0.042   PREDICTED: hypothetical protein XP_002343400 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
TTMA                  0.016   hypothetical protein LOC645369 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
CASZ1                 0.015   castor homolog 1, zinc finger isoform a 
CASZ1                 0.015   castor homolog 1, zinc finger isoform b 
HIRIP3                0.014   HIRA interacting protein 3 
SAMD1                 0.014   sterile alpha motif domain containing 1 
LOC100130360          0.013   PREDICTED: hypothetical protein 
RAPH1                 0.013   Ras association and pleckstrin homology domains 1 is...
TAF4                  0.012   TBP-associated factor 4 
LOC100291061          0.012   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.012   PREDICTED: hypothetical protein XP_002343855 
BSN                   0.012   bassoon protein 
C2orf55               0.012   hypothetical protein LOC343990 
IER5L                 0.012   immediate early response 5-like 
TMPRSS13              0.012   transmembrane protease, serine 13 
C10orf47              0.011   hypothetical protein LOC254427 
BASP1                 0.011   brain abundant, membrane attached signal protein 1 [...
ANKRD56               0.011   ankyrin repeat domain 56 
FAM48B1               0.011   hypothetical protein LOC100130302 
TOX4                  0.011   epidermal Langerhans cell protein LCP1 
NSBP1                 0.011   nucleosomal binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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