Guide to the Human Genome
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Name: KCNH3 Sequence: fasta or formatted (1083aa) NCBI GI: 38569493
Description:

potassium voltage-gated channel, subfamily H (eag-related), member 3

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         92           2
 C cysteine            2.5         27           1
 D aspartate           3.7         40           1
 E glutamate           5.6         61           2
 F phenylalanine       3.5         38           1
 G glycine             9.1         99           3
 H histidine           2.1         23           1
 I isoleucine          3.0         32           2
 K lysine              3.2         35           1
 L leucine            12.3        133           2
 M methionine          1.4         15           1
 N asparagine          2.2         24           2
 P proline             8.4         91           3
 Q glutamine           3.4         37           2
 R arginine            6.6         72           3
 S serine              9.0         98           4
 T threonine           5.3         57           2
 V valine              6.1         66           2
 W tryptophan          1.5         16           1
 Y tyrosine            2.5         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, subfamily H (eag-re... 
KCNH8                 0.424   potassium voltage-gated channel, subfamily H, member...
KCNH4                 0.411   potassium voltage-gated channel, subfamily H, member ...
KCNH6                 0.235   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.224   potassium voltage-gated channel, subfamily H, member ...
KCNH1                 0.220   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.219   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.204   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.194   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.194   voltage-gated potassium channel, subfamily H, member ...
KCNH5                 0.192   potassium voltage-gated channel, subfamily H, member...
KCNH7                 0.182   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.170   voltage-gated potassium channel, subfamily H, member...
KCNH7                 0.130   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.115   potassium voltage-gated channel, subfamily H, member...
HCN2                  0.059   hyperpolarization activated cyclic nucleotide-gated...
HCN4                  0.059   hyperpolarization activated cyclic nucleotide-gated p...
CNGA3                 0.058   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.058   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
HCN1                  0.055   hyperpolarization activated cyclic nucleotide-gated...
CNGA1                 0.051   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.051   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
HCN3                  0.050   hyperpolarization activated cyclic nucleotide-gated ...
CNGA2                 0.049   cyclic nucleotide gated channel alpha 2 
CNGA4                 0.046   cyclic nucleotide gated channel alpha 4 
CNGB1                 0.030   cyclic nucleotide gated channel beta 1 isoform a [H...
CNGB3                 0.025   cyclic nucleotide gated channel beta 3 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
ZNF828                0.017   zinc finger protein 828 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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