Search of human proteins with 11136628

Search of human proteins with 11136628

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11136628 eukaryotic translation elongation factor 1 beta 2
[Homo sapiens]
         (225 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11136628 eukaryotic translation elongation factor 1 beta 2 [H...   452   e-127
gi|4503477 eukaryotic translation elongation factor 1 beta 2 [Ho...   452   e-127
gi|83376130 eukaryotic translation elongation factor 1 beta 2 [H...   452   e-127
gi|194239731 eukaryotic translation elongation factor 1 delta is...   224   4e-59
gi|194239727 eukaryotic translation elongation factor 1 delta is...   224   4e-59
gi|194239725 eukaryotic translation elongation factor 1 delta is...   224   4e-59
gi|194239723 eukaryotic translation elongation factor 1 delta is...   224   4e-59
gi|25453472 eukaryotic translation elongation factor 1 delta iso...   224   4e-59
gi|25453474 eukaryotic translation elongation factor 1 delta iso...   224   4e-59
gi|194239729 eukaryotic translation elongation factor 1 delta is...   224   4e-59
gi|62240992 cysteinyl-tRNA synthetase isoform c [Homo sapiens]         52   3e-07
gi|54607116 leiomodin 3 (fetal) [Homo sapiens]                         35   0.052
gi|126032348 hect domain and RLD 2 [Homo sapiens]                      33   0.15 
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi...    33   0.15 
gi|28274705 family with sequence similarity 9, member A [Homo sa...    33   0.15 
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]           33   0.15 
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]           33   0.15 
gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]         33   0.20 
gi|20149698 l(3)mbt-like 2 [Homo sapiens]                              33   0.20 
gi|56118310 nuclear casein kinase and cyclin-dependent kinase su...    33   0.20 
gi|55956788 nucleolin [Homo sapiens]                                   33   0.26 
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]      33   0.26 
gi|4557509 cylicin 2 [Homo sapiens]                                    33   0.26 
gi|197927454 DEK oncogene isoform 2 [Homo sapiens]                     33   0.26 
gi|4503249 DEK oncogene isoform 1 [Homo sapiens]                       33   0.26 
gi|187960109 RNA binding motif protein 28 [Homo sapiens]               32   0.34 
gi|41327749 anaphase-promoting complex subunit 4 [Homo sapiens]        32   0.34 
gi|91208420 bassoon protein [Homo sapiens]                             32   0.44 
gi|7657138 golgi integral membrane protein 4 [Homo sapiens]            32   0.44 
gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo sa...    32   0.44 

>gi|11136628 eukaryotic translation elongation factor 1 beta 2 [Homo
           sapiens]
          Length = 225

 Score =  452 bits (1162), Expect = e-127
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK 60
           MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
Sbjct: 1   MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK 60

Query: 61  SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120
           SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
Sbjct: 61  SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120

Query: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV 180
           ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
Sbjct: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV 180

Query: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
           GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
Sbjct: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225


>gi|4503477 eukaryotic translation elongation factor 1 beta 2 [Homo
           sapiens]
          Length = 225

 Score =  452 bits (1162), Expect = e-127
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK 60
           MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
Sbjct: 1   MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK 60

Query: 61  SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120
           SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
Sbjct: 61  SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120

Query: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV 180
           ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
Sbjct: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV 180

Query: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
           GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
Sbjct: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225


>gi|83376130 eukaryotic translation elongation factor 1 beta 2 [Homo
           sapiens]
          Length = 225

 Score =  452 bits (1162), Expect = e-127
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK 60
           MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
Sbjct: 1   MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK 60

Query: 61  SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120
           SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
Sbjct: 61  SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120

Query: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV 180
           ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
Sbjct: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV 180

Query: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
           GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
Sbjct: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225


>gi|194239731 eukaryotic translation elongation factor 1 delta
           isoform 2 [Homo sapiens]
          Length = 281

 Score =  224 bits (572), Expect = 4e-59
 Identities = 113/144 (78%), Positives = 127/144 (88%), Gaps = 2/144 (1%)

Query: 84  VEDTTGSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSS 141
           VE      AT ++DD  DDIDLFGSD+EEE +EA +LREERL QY  KKAKKPALVAKSS
Sbjct: 138 VEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSS 197

Query: 142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 201
           ILLDVKPWDDETDMA+LE CVRSIQ DGLVWG+SKLVPVGYGI+KLQIQCVVEDDKVGTD
Sbjct: 198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 257

Query: 202 MLEEQITAFEDYVQSMDVAAFNKI 225
           +LEE+IT FE++VQS+D+AAFNKI
Sbjct: 258 LLEEEITKFEEHVQSVDIAAFNKI 281


>gi|194239727 eukaryotic translation elongation factor 1 delta
           isoform 2 [Homo sapiens]
          Length = 281

 Score =  224 bits (572), Expect = 4e-59
 Identities = 113/144 (78%), Positives = 127/144 (88%), Gaps = 2/144 (1%)

Query: 84  VEDTTGSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSS 141
           VE      AT ++DD  DDIDLFGSD+EEE +EA +LREERL QY  KKAKKPALVAKSS
Sbjct: 138 VEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSS 197

Query: 142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 201
           ILLDVKPWDDETDMA+LE CVRSIQ DGLVWG+SKLVPVGYGI+KLQIQCVVEDDKVGTD
Sbjct: 198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 257

Query: 202 MLEEQITAFEDYVQSMDVAAFNKI 225
           +LEE+IT FE++VQS+D+AAFNKI
Sbjct: 258 LLEEEITKFEEHVQSVDIAAFNKI 281


>gi|194239725 eukaryotic translation elongation factor 1 delta
           isoform 3 [Homo sapiens]
          Length = 646

 Score =  224 bits (572), Expect = 4e-59
 Identities = 113/144 (78%), Positives = 127/144 (88%), Gaps = 2/144 (1%)

Query: 84  VEDTTGSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSS 141
           VE      AT ++DD  DDIDLFGSD+EEE +EA +LREERL QY  KKAKKPALVAKSS
Sbjct: 503 VEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSS 562

Query: 142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 201
           ILLDVKPWDDETDMA+LE CVRSIQ DGLVWG+SKLVPVGYGI+KLQIQCVVEDDKVGTD
Sbjct: 563 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 622

Query: 202 MLEEQITAFEDYVQSMDVAAFNKI 225
           +LEE+IT FE++VQS+D+AAFNKI
Sbjct: 623 LLEEEITKFEEHVQSVDIAAFNKI 646


>gi|194239723 eukaryotic translation elongation factor 1 delta
           isoform 1 [Homo sapiens]
          Length = 647

 Score =  224 bits (572), Expect = 4e-59
 Identities = 113/144 (78%), Positives = 127/144 (88%), Gaps = 2/144 (1%)

Query: 84  VEDTTGSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSS 141
           VE      AT ++DD  DDIDLFGSD+EEE +EA +LREERL QY  KKAKKPALVAKSS
Sbjct: 504 VEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSS 563

Query: 142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 201
           ILLDVKPWDDETDMA+LE CVRSIQ DGLVWG+SKLVPVGYGI+KLQIQCVVEDDKVGTD
Sbjct: 564 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 623

Query: 202 MLEEQITAFEDYVQSMDVAAFNKI 225
           +LEE+IT FE++VQS+D+AAFNKI
Sbjct: 624 LLEEEITKFEEHVQSVDIAAFNKI 647


>gi|25453472 eukaryotic translation elongation factor 1 delta
           isoform 2 [Homo sapiens]
          Length = 281

 Score =  224 bits (572), Expect = 4e-59
 Identities = 113/144 (78%), Positives = 127/144 (88%), Gaps = 2/144 (1%)

Query: 84  VEDTTGSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSS 141
           VE      AT ++DD  DDIDLFGSD+EEE +EA +LREERL QY  KKAKKPALVAKSS
Sbjct: 138 VEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSS 197

Query: 142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 201
           ILLDVKPWDDETDMA+LE CVRSIQ DGLVWG+SKLVPVGYGI+KLQIQCVVEDDKVGTD
Sbjct: 198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 257

Query: 202 MLEEQITAFEDYVQSMDVAAFNKI 225
           +LEE+IT FE++VQS+D+AAFNKI
Sbjct: 258 LLEEEITKFEEHVQSVDIAAFNKI 281


>gi|25453474 eukaryotic translation elongation factor 1 delta
           isoform 1 [Homo sapiens]
          Length = 647

 Score =  224 bits (572), Expect = 4e-59
 Identities = 113/144 (78%), Positives = 127/144 (88%), Gaps = 2/144 (1%)

Query: 84  VEDTTGSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSS 141
           VE      AT ++DD  DDIDLFGSD+EEE +EA +LREERL QY  KKAKKPALVAKSS
Sbjct: 504 VEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSS 563

Query: 142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 201
           ILLDVKPWDDETDMA+LE CVRSIQ DGLVWG+SKLVPVGYGI+KLQIQCVVEDDKVGTD
Sbjct: 564 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 623

Query: 202 MLEEQITAFEDYVQSMDVAAFNKI 225
           +LEE+IT FE++VQS+D+AAFNKI
Sbjct: 624 LLEEEITKFEEHVQSVDIAAFNKI 647


>gi|194239729 eukaryotic translation elongation factor 1 delta
           isoform 4 [Homo sapiens]
          Length = 257

 Score =  224 bits (572), Expect = 4e-59
 Identities = 113/144 (78%), Positives = 127/144 (88%), Gaps = 2/144 (1%)

Query: 84  VEDTTGSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSS 141
           VE      AT ++DD  DDIDLFGSD+EEE +EA +LREERL QY  KKAKKPALVAKSS
Sbjct: 114 VEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSS 173

Query: 142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 201
           ILLDVKPWDDETDMA+LE CVRSIQ DGLVWG+SKLVPVGYGI+KLQIQCVVEDDKVGTD
Sbjct: 174 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 233

Query: 202 MLEEQITAFEDYVQSMDVAAFNKI 225
           +LEE+IT FE++VQS+D+AAFNKI
Sbjct: 234 LLEEEITKFEEHVQSVDIAAFNKI 257


>gi|62240992 cysteinyl-tRNA synthetase isoform c [Homo sapiens]
          Length = 831

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 10 AGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPP-PADLCHALRWYNHIKS 61
          A  Q LN++L+ +SY++GY  SQADV  F  +S+PP    L H  RW+ HI++
Sbjct: 23 ARAQALNEHLSTRSYVQGYSLSQADVDAFRQLSAPPADPQLFHVARWFRHIEA 75


>gi|54607116 leiomodin 3 (fetal) [Homo sapiens]
          Length = 560

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 58  HIKSYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKR 117
           ++  Y KEK +   V       G +++++T      +  DDDD +  G DD EESEE  R
Sbjct: 114 NMAQYLKEKLNNEIVANKRESKGSSNIQETDEEDEEEEDDDDDDE--GEDDGEESEETNR 171

Query: 118 LRE 120
             E
Sbjct: 172 EEE 174


>gi|126032348 hect domain and RLD 2 [Homo sapiens]
          Length = 4834

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 11/77 (14%)

Query: 86  DTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLD 145
           ++T +G    + DD ++  G+  E+ +++ K+  EE            PA + ++  +LD
Sbjct: 51  ESTQNGELPPRKDDSVEPSGTKKEDLNDKEKKDEEET-----------PAPIYRAKSILD 99

Query: 146 VKPWDDETDMAKLEECV 162
              W  + D+ +L+EC+
Sbjct: 100 SWVWGKQPDVNELKECL 116


>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
           sapiens]
          Length = 1031

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 18/147 (12%)

Query: 64  KEKASLPGVKKALGKYGPADVEDTTGSGAT-------DSKDDDDIDLFGSDDEEESEEAK 116
           + ++S PG K    +      E T G  ++       D K+D+     G+ D+ + EE  
Sbjct: 101 RSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEM 160

Query: 117 RLREERLAQYESKKAKKP-----ALVAKSSILLDVKPW------DDETDMAKLEECVRSI 165
           R R+ER+ ++  ++ KK       L  +   +   K W      DDE D A+ E+    +
Sbjct: 161 RKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEM 220

Query: 166 QADGLVWGSSKLVPVGYGIKKLQIQCV 192
           + + L    + +  V   +KK  ++ V
Sbjct: 221 EGEELDPLDAYMEEVKEEVKKFNMRSV 247


>gi|28274705 family with sequence similarity 9, member A [Homo
           sapiens]
          Length = 332

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 12  LQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPG 71
           L VL +Y+A+K   +    ++A  A  EA ++   A     +      +  EKE+     
Sbjct: 175 LNVLKEYIAEKQKDDEAEEAEAAAAAAEAAAAAEAAAAAAEVIVVEDEEEEEKEEEEEKE 234

Query: 72  VKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKA 131
            ++  G+      E   G G  + ++        +++EEE EE +   E+  A  E +K 
Sbjct: 235 EEEEEGEEEGGGEEGEEGGGGGEGEE--------TEEEEEEEEEEEEEEQIKAFQEKQKR 286

Query: 132 KKPALVAKSSILLDVKP 148
            +     +S  L ++KP
Sbjct: 287 WQQPTGVRSWRLREMKP 303


>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
          Length = 709

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 94  DSKDDDDIDLFGSDDEEESEEAKRLREERLAQYE 127
           D+++D+++D  G ++EEE EE +   EE   +YE
Sbjct: 218 DAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYE 251


>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
          Length = 727

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 94  DSKDDDDIDLFGSDDEEESEEAKRLREERLAQYE 127
           D+++D+++D  G ++EEE EE +   EE   +YE
Sbjct: 218 DAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYE 251


>gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]
          Length = 1054

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 70  PGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESK 129
           PG++  L  +  +D E+       D+ DD+D++ F +D ++E+E  K+L  E        
Sbjct: 617 PGLRSQLDDHPESDDEENF----IDANDDEDMEKF-TDADKETEIVKKLETEETVPETDV 671

Query: 130 KAKKPALVA 138
           + KKP + +
Sbjct: 672 ETKKPEVAS 680


>gi|20149698 l(3)mbt-like 2 [Homo sapiens]
          Length = 705

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 81  PADVEDTTGSGATDSKDDDDIDLFGSDDEEE-------SEEAKRLREERLAQYESKKA 131
           P  +E+T  S   + ++DDD++LFG  D          SE +  L E   A+ E ++A
Sbjct: 4   PRSIEETPSSEPMEEEEDDDLELFGGYDSFRSYNSSVGSESSSYLEESSEAENEDREA 61


>gi|56118310 nuclear casein kinase and cyclin-dependent kinase
           substrate 1 [Homo sapiens]
          Length = 243

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 18/113 (15%)

Query: 73  KKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAK 132
           K+  GK    D ED+        KDD        D E+E E+ K +R++R A      A 
Sbjct: 47  KRRSGKNSQEDSEDSEDKDVKTKKDDSHS---AEDSEDEKEDHKNVRQQRQA------AS 97

Query: 133 KPALVAKSSILLDV--KPWDDETDMAKLEECVRSIQADGLV-------WGSSK 176
           K A   +  ++ DV  +   +E D A  +E       D L+       +GSSK
Sbjct: 98  KAASKQREMLMEDVGSEEEQEEEDEAPFQEKDSGSDEDFLMEDDDDSDYGSSK 150


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 94  DSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPA 135
           D  DDDD D    DDE++ EE +   EE + +   K+ K+ A
Sbjct: 244 DEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMA 285



 Score = 31.2 bits (69), Expect = 0.75
 Identities = 18/53 (33%), Positives = 24/53 (45%)

Query: 83  DVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPA 135
           D ED       D +DDDD D    ++EEE E  K    +R  +   +KA   A
Sbjct: 241 DDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEA 293



 Score = 30.8 bits (68), Expect = 0.98
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 81  PADVEDTTGSGATDSKDD-DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAK 139
           PA ++    + A++ +DD DD D    DD+EE +  +   E   A  + KKA K   V  
Sbjct: 172 PAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPA--KGKKAAKVVPVKA 229

Query: 140 SSILLDVKPWDDETD 154
            ++  D    +D+ D
Sbjct: 230 KNVAEDEDEEEDDED 244



 Score = 30.4 bits (67), Expect = 1.3
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 61  SYEKEKASLPGVKKALGKYGPADV----EDTTGSGATDSKDDDDIDLFGSDDEEESEEAK 116
           S E+   + P   K   K  P       ED       + +DDDD +    DD+E+ EE +
Sbjct: 206 SEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEE 265

Query: 117 RLREERLAQYESKKAKKPALVAKSS 141
              EE   +    K KK     K++
Sbjct: 266 EEEEEEPVKEAPGKRKKEMAKQKAA 290



 Score = 29.6 bits (65), Expect = 2.2
 Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 65  EKASLPGVKKAL----GKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120
           +K + PG  KAL    GK G A       +G    K+D D +    DD EE EE     +
Sbjct: 109 KKGATPG--KALVATPGKKGAAIPAKGAKNGKNAKKEDSDEE--EDDDSEEDEEDDEDED 164

Query: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETD-----MAKLEECVRSIQADGLVWGSS 175
           E   + E    K  A    S    D    DDE D         EE + +  A G    ++
Sbjct: 165 EDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGK--KAA 222

Query: 176 KLVPV 180
           K+VPV
Sbjct: 223 KVVPV 227


>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
          Length = 1390

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 83  DVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSI 142
           D ED       D  DDD+ D    D EEE+++   LR+ +   Y     +KP    K +I
Sbjct: 261 DDEDDDDDDDDDDDDDDEDDEDEEDGEEENQKRYYLRQRKATVYYQAPLEKPRHQRKPNI 320



 Score = 30.8 bits (68), Expect = 0.98
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 80  GPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAK 132
           G     +  G    D  DDDD D    DD+E+ E+ +   EE   +Y  ++ K
Sbjct: 248 GEDQEHEDDGEDEDDEDDDDDDDDDDDDDDEDDEDEEDGEEENQKRYYLRQRK 300


>gi|4557509 cylicin 2 [Homo sapiens]
          Length = 348

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 63  EKEKASLPGVKKA-LGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAK--RLR 119
           + +K S  G K A  GK    + ED  G    D+K D      G D   ESE  K    +
Sbjct: 156 DAKKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKDSATESEGEKGGTEK 215

Query: 120 EERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEE 160
           + +  + +SKK K  A+  ++    + K  D + D  K +E
Sbjct: 216 DSKKGKKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDE 256


>gi|197927454 DEK oncogene isoform 2 [Homo sapiens]
          Length = 341

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 60  KSYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEE-ESEE---- 114
           K  +KE+ S    +KA     P  + D + S   + K+ ++     SDDE+ ESEE    
Sbjct: 168 KGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNKEE----SSDDEDKESEEEPPK 223

Query: 115 --AKRLREERLAQYESKKAKKPALVAKS 140
             AKR + ++ A  +SKK+ K A V K+
Sbjct: 224 KTAKREKPKQKATSKSKKSVKSANVKKA 251


>gi|4503249 DEK oncogene isoform 1 [Homo sapiens]
          Length = 375

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 60  KSYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEE-ESEE---- 114
           K  +KE+ S    +KA     P  + D + S   + K+ ++     SDDE+ ESEE    
Sbjct: 202 KGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNKEE----SSDDEDKESEEEPPK 257

Query: 115 --AKRLREERLAQYESKKAKKPALVAKS 140
             AKR + ++ A  +SKK+ K A V K+
Sbjct: 258 KTAKREKPKQKATSKSKKSVKSANVKKA 285


>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
          Length = 759

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 59  IKSYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRL 118
           + +  +EK+     ++++ K G  + ED       D  DDDD +    DDE+E EE    
Sbjct: 201 VSAIGEEKSHESKHQESVKKKGREE-EDMEEEENDDDDDDDDEEDGVFDDEDEEEENIES 259

Query: 119 REERLAQYESKKAKKPALVAKSS 141
           +  +  Q + +  K+PA  AKSS
Sbjct: 260 KVTKPVQIQKRAVKRPA-PAKSS 281


>gi|41327749 anaphase-promoting complex subunit 4 [Homo sapiens]
          Length = 808

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 94  DSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDET 153
           D  D+ ++D    ++EE S +  +++EE L++ E++  +  A      I++ V+  D E 
Sbjct: 747 DIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKVEKLDPEL 806

Query: 154 D 154
           D
Sbjct: 807 D 807


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 19/104 (18%)

Query: 30   PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPADVEDTTG 89
            PS+ ++ V  A   P P     A+          KE A  P      G+  PAD     G
Sbjct: 2296 PSRPEMPVGAAREEPLPTTTPAAI----------KEAAGAPAPAPLAGQKPPADAAPGGG 2345

Query: 90   SGATDSKDDDDIDLFGSDDEEES-EEAKRLREERLAQYESKKAK 132
            SGA            G + EE S EE +R ++E+L Q E ++ +
Sbjct: 2346 SGALSRP--------GFEKEEASQEERQRKQQEQLLQLERERVE 2381


>gi|7657138 golgi integral membrane protein 4 [Homo sapiens]
          Length = 696

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 56  YNHIKSYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEA 115
           Y     ++ E    PG +    + GP + +  + +     +D +  D   +  E+E EEA
Sbjct: 506 YERDNQHQDEAEGDPGNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEA 565

Query: 116 KRLREERL-----AQYESKKAKKPALVAKSSILL-DVKPWDDETDMAKLEECVRSIQAD 168
           +++REE L      Q +S + ++   V +  ++  +    +D  D    EE    +Q D
Sbjct: 566 EQVREENLPDENEEQKQSNQKQENTEVEEHLVMAGNPDQQEDNVDEQYQEEAEEEVQED 624


>gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo
            sapiens]
          Length = 1826

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 96   KDDDDIDLFGSDDEEESEEAKRLREE----RLAQYESKKAKKPALVAKSSILLDVKPWDD 151
            ++D D+D+ G DDEEE  + K    E     LA  E    ++P        LL  +  DD
Sbjct: 1713 EEDSDVDVEGYDDEEEDGKPKPPAPEGGDGDLADEEEGTVQQPEASVLYEDLLISEGEDD 1772

Query: 152  ETDMAKLEECVRSIQADGLVWGSSKLVPVGYG 183
            E D    EE      A  L    S    VGYG
Sbjct: 1773 EEDAGSDEEGDNPFSAIQLSESGSD-SDVGYG 1803


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,908,469
Number of Sequences: 37866
Number of extensions: 413916
Number of successful extensions: 2507
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 2204
Number of HSP's gapped (non-prelim): 271
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.