Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DEK Sequence: fasta or formatted (341aa) NCBI GI: 197927454
Description:

DEK oncogene isoform 2

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [375aa] DEK oncogene isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         14           2
 C cysteine            1.5          5           1
 D aspartate           5.3         18           2
 E glutamate          15.5         53           7
 F phenylalanine       2.3          8           2
 G glycine             3.8         13           1
 H histidine           0.9          3           1
 I isoleucine          2.9         10           1
 K lysine             18.2         62           3
 L leucine             7.0         24           2
 M methionine          2.1          7           1
 N asparagine          3.8         13           1
 P proline             5.9         20           2
 Q glutamine           2.1          7           1
 R arginine            3.5         12           1
 S serine             11.4         39           3
 T threonine           5.0         17           2
 V valine              3.2         11           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEK oncogene isoform 2 
DEK                   0.972   DEK oncogene isoform 1 
CYLC2                 0.054   cylicin 2 
ATRX                  0.054   transcriptional regulator ATRX isoform 2 
ATRX                  0.054   transcriptional regulator ATRX isoform 1 
RBM25                 0.052   RNA binding motif protein 25 
CYLC1                 0.049   cylicin, basic protein of sperm head cytoskeleton 1...
TRDN                  0.049   triadin 
FAM133A               0.049   hypothetical protein LOC286499 
CALD1                 0.049   caldesmon 1 isoform 1 
WDR87                 0.048   NYD-SP11 protein 
NEFM                  0.046   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.046   neurofilament, medium polypeptide 150kDa isoform 2 ...
MAP1B                 0.046   microtubule-associated protein 1B 
EIF5B                 0.046   eukaryotic translation initiation factor 5B 
ANKRD12               0.046   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.046   ankyrin repeat domain 12 isoform 1 
LOC100294088          0.046   PREDICTED: hypothetical protein, partial 
SETD1A                0.046   SET domain containing 1A 
NKAP                  0.045   NFKB activating protein 
SRRT                  0.045   arsenate resistance protein 2 isoform d 
SRRT                  0.045   arsenate resistance protein 2 isoform a 
SFRS11                0.045   splicing factor, arginine/serine-rich 11 
LYAR                  0.045   Ly1 antibody reactive homolog 
LYAR                  0.045   Ly1 antibody reactive homolog 
EIF3CL                0.045   eukaryotic translation initiation factor 3, subunit...
RTF1                  0.045   Paf1/RNA polymerase II complex component 
EIF3C                 0.045   eukaryotic translation initiation factor 3, subunit ...
EIF3C                 0.045   eukaryotic translation initiation factor 3, subunit C...
SR140                 0.043   U2-associated SR140 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press