Guide to the Human Genome
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Name: RBM28 Sequence: fasta or formatted (759aa) NCBI GI: 187960109
Description:

RNA binding motif protein 28

Referenced in:

Nucleus and Nucleolus
RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         55           2
 C cysteine            1.2          9           1
 D aspartate           5.9         45           8
 E glutamate          10.5         80           4
 F phenylalanine       3.6         27           1
 G glycine             6.2         47           2
 H histidine           1.8         14           2
 I isoleucine          2.8         21           2
 K lysine             13.7        104           3
 L leucine             8.3         63           3
 M methionine          1.6         12           1
 N asparagine          3.2         24           3
 P proline             4.3         33           2
 Q glutamine           6.1         46           3
 R arginine            5.9         45           2
 S serine              6.1         46           2
 T threonine           4.1         31           2
 V valine              6.2         47           2
 W tryptophan          0.5          4           1
 Y tyrosine            0.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 28 
RBM19                 0.045   RNA binding motif protein 19 
RBM19                 0.045   RNA binding motif protein 19 
RBM19                 0.045   RNA binding motif protein 19 
NCL                   0.039   nucleolin 
PABPC4                0.039   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.039   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.039   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC1                0.035   poly(A) binding protein, cytoplasmic 1 
PABPC3                0.034   poly(A) binding protein, cytoplasmic 3 
PABPC1L               0.033   poly(A)-binding protein, cytoplasmic 1-like 
SYNCRIP               0.031   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.031   synaptotagmin binding, cytoplasmic RNA interacting ...
CUGBP2                0.031   CUG triplet repeat, RNA binding protein 2 isoform 4...
CUGBP2                0.031   CUG triplet repeat, RNA binding protein 2 isoform 1 ...
CUGBP2                0.031   CUG triplet repeat, RNA binding protein 2 isoform 2...
CUGBP2                0.031   CUG triplet repeat, RNA binding protein 2 isoform 3 ...
SFRS5                 0.031   splicing factor, arginine/serine-rich 5 
SFRS5                 0.031   splicing factor, arginine/serine-rich 5 
PABPC4L               0.031   poly(A) binding protein, cytoplasmic 4-like 
TIAL1                 0.030   TIA-1 related protein isoform 2 
TIAL1                 0.029   TIA-1 related protein isoform 1 
DAZAP1                0.029   DAZ associated protein 1 isoform a 
DAZAP1                0.029   DAZ associated protein 1 isoform b 
ELAVL2                0.028   ELAV (embryonic lethal, abnormal vision, Drosophila...
MSI1                  0.028   musashi 1 
CUGBP1                0.028   CUG triplet repeat, RNA-binding protein 1 isoform 3 ...
CUGBP1                0.028   CUG triplet repeat, RNA-binding protein 1 isoform 1 [...
CUGBP1                0.028   CUG triplet repeat, RNA-binding protein 1 isoform 2 ...
BRUNOL4               0.028   bruno-like 4, RNA binding protein isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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