Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CARS Sequence: fasta or formatted (831aa) NCBI GI: 62240992
Description:

cysteinyl-tRNA synthetase isoform c

Referenced in:

tRNA Enzymes

Other entries for this name:
alt prot [748aa] cysteinyl-tRNA synthetase isoform b
alt prot [726aa] cysteinyl-tRNA synthetase isoform a
alt prot [738aa] cysteinyl-tRNA synthetase isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         65           2
 C cysteine            1.7         14           2
 D aspartate           6.1         51           2
 E glutamate           8.4         70           3
 F phenylalanine       4.3         36           2
 G glycine             5.4         45           3
 H histidine           2.6         22           2
 I isoleucine          3.5         29           2
 K lysine              8.1         67           3
 L leucine            10.2         85           2
 M methionine          2.3         19           1
 N asparagine          3.5         29           1
 P proline             4.7         39           2
 Q glutamine           4.8         40           2
 R arginine            5.7         47           2
 S serine              7.0         58           2
 T threonine           3.7         31           2
 V valine              5.5         46           2
 W tryptophan          1.4         12           1
 Y tyrosine            3.1         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cysteinyl-tRNA synthetase isoform c 
CARS                  0.891   cysteinyl-tRNA synthetase isoform b 
CARS                  0.852   cysteinyl-tRNA synthetase isoform d 
CARS                  0.838   cysteinyl-tRNA synthetase isoform a 
CARS2                 0.130   cysteinyl-tRNA synthetase 2, mitochondrial 
EEF1B2                0.016   eukaryotic translation elongation factor 1 beta 2 [H...
EEF1B2                0.016   eukaryotic translation elongation factor 1 beta 2 [Ho...
EEF1B2                0.016   eukaryotic translation elongation factor 1 beta 2 [H...
UPF2                  0.012   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.012   UPF2 regulator of nonsense transcripts homolog [Homo...
LOC283685             0.011   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.010   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CALD1                 0.010   caldesmon 1 isoform 5 
CALD1                 0.010   caldesmon 1 isoform 4 
CALD1                 0.010   caldesmon 1 isoform 3 
CALD1                 0.010   caldesmon 1 isoform 2 
CALD1                 0.010   caldesmon 1 isoform 1 
LOC645202             0.010   PREDICTED: hypothetical protein LOC645202 
TAF3                  0.010   RNA polymerase II transcription factor TAFII140 [Ho...
CENPE                 0.010   centromere protein E 
MAP4K4                0.010   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.010   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.010   mitogen-activated protein kinase kinase kinase kinas...
LOC100294088          0.010   PREDICTED: hypothetical protein, partial 
UPF3A                 0.009   UPF3 regulator of nonsense transcripts homolog A iso...
UPF3A                 0.009   UPF3 regulator of nonsense transcripts homolog A iso...
ACBD3                 0.008   acyl-Coenzyme A binding domain containing 3 
INCENP                0.008   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.008   inner centromere protein antigens 135/155kDa isofor...
LARS                  0.008   leucyl-tRNA synthetase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press