Guide to the Human Genome
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Name: NUCKS1 Sequence: fasta or formatted (243aa) NCBI GI: 56118310
Description:

nuclear casein kinase and cyclin-dependent kinase substrate 1

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         12           2
 C cysteine            0.0          0           0
 D aspartate          11.9         29           4
 E glutamate          14.8         36           3
 F phenylalanine       1.2          3           1
 G glycine             4.9         12           1
 H histidine           0.8          2           1
 I isoleucine          0.4          1           1
 K lysine             15.6         38           3
 L leucine             1.2          3           1
 M methionine          2.5          6           1
 N asparagine          2.1          5           1
 P proline             8.2         20           3
 Q glutamine           3.7          9           2
 R arginine            5.8         14           2
 S serine             13.2         32           2
 T threonine           3.3          8           1
 V valine              4.1         10           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear casein kinase and cyclin-dependent kinase su... 
RAD51AP1              0.127   RAD51 associated protein 1 isoform b 
NEFM                  0.101   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.101   neurofilament, medium polypeptide 150kDa isoform 2 ...
NCL                   0.097   nucleolin 
RAD51AP1              0.095   RAD51 associated protein 1 isoform a 
CYLC1                 0.086   cylicin, basic protein of sperm head cytoskeleton 1...
NOLC1                 0.086   nucleolar and coiled-body phosphoprotein 1 
LEO1                  0.080   Leo1, Paf1/RNA polymerase II complex component, homo...
HIRIP3                0.080   HIRA interacting protein 3 
GTF2F1                0.080   general transcription factor IIF, polypeptide 1, 74...
SFRS12                0.080   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.080   splicing factor, arginine/serine-rich 12 isoform b [...
PELP1                 0.078   proline, glutamic acid and leucine rich protein 1 [...
NEFH                  0.075   neurofilament, heavy polypeptide 200kDa 
ZNF652                0.075   zinc finger protein 652 
ZNF652                0.075   zinc finger protein 652 
IWS1                  0.073   IWS1 homolog 
SETD1A                0.073   SET domain containing 1A 
RBM25                 0.073   RNA binding motif protein 25 
LOC100286959          0.073   PREDICTED: hypothetical protein XP_002343921 
ATRX                  0.071   transcriptional regulator ATRX isoform 2 
ATRX                  0.071   transcriptional regulator ATRX isoform 1 
CYLC2                 0.069   cylicin 2 
ARID4A                0.069   retinoblastoma-binding protein 1 isoform III 
ARID4A                0.069   retinoblastoma-binding protein 1 isoform II 
ARID4A                0.069   retinoblastoma-binding protein 1 isoform I 
NSBP1                 0.067   nucleosomal binding protein 1 
AP3D1                 0.067   adaptor-related protein complex 3, delta 1 subunit ...
LOC100133599          0.067   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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