Guide to the Human Genome
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Name: LOC100127984 Sequence: fasta or formatted (186aa) NCBI GI: 169169909
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {186aa} PREDICTED: hypothetical protein
alt prot {186aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         13           2
 C cysteine            1.1          2           1
 D aspartate           2.7          5           1
 E glutamate           3.8          7           1
 F phenylalanine       1.6          3           1
 G glycine            16.1         30           2
 H histidine           2.2          4           1
 I isoleucine          2.2          4           2
 K lysine              3.8          7           1
 L leucine             7.5         14           2
 M methionine          1.6          3           1
 N asparagine          2.7          5           1
 P proline            11.3         21           2
 Q glutamine           4.8          9           1
 R arginine            9.7         18           1
 S serine              8.1         15           1
 T threonine           5.9         11           1
 V valine              3.8          7           1
 W tryptophan          3.2          6           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127984          1.000   PREDICTED: hypothetical protein 
LOC100127984          0.992   PREDICTED: hypothetical protein 
COL9A3                0.048   alpha 3 type IX collagen 
COL18A1               0.043   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.043   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.043   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL3A1                0.040   collagen type III alpha 1 preproprotein 
COL11A2               0.038   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.038   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.038   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL1A1                0.035   alpha 1 type I collagen preproprotein 
COL2A1                0.035   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.035   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL12A1               0.032   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.032   collagen, type XII, alpha 1 long isoform precursor [...
COL5A3                0.032   collagen, type V, alpha 3 preproprotein 
COL14A1               0.032   collagen, type XIV, alpha 1 
COL15A1               0.029   alpha 1 type XV collagen precursor 
COL4A5                0.029   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.029   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.029   type IV collagen alpha 5 isoform 3 precursor 
COL24A1               0.029   collagen, type XXIV, alpha 1 
COL4A3                0.027   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.027   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.027   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.027   alpha 3 type IV collagen isoform 1 precursor 
COL4A2                0.027   alpha 2 type IV collagen preproprotein 
COL13A1               0.027   alpha 1 type XIII collagen isoform 18 
COL13A1               0.027   alpha 1 type XIII collagen isoform 14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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