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Search of human proteins with 169165309
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169165309 PREDICTED: hypothetical protein [Homo sapiens]
(283 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169166115 PREDICTED: hypothetical protein [Homo sapiens] 578 e-165
gi|169165309 PREDICTED: hypothetical protein [Homo sapiens] 578 e-165
gi|169165719 PREDICTED: hypothetical protein [Homo sapiens] 86 4e-17
gi|154937344 complement component 1, q subcomponent-like 2 [Homo... 42 8e-04
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 40 0.002
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 40 0.002
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 40 0.003
gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens] 39 0.005
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 38 0.009
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 38 0.011
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 38 0.011
gi|61835232 growth differentiation factor 7 preproprotein [Homo ... 37 0.015
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 37 0.020
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 37 0.020
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 37 0.020
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 37 0.020
gi|4507741 twist [Homo sapiens] 37 0.020
gi|169206224 PREDICTED: hypothetical protein [Homo sapiens] 36 0.033
gi|169206527 PREDICTED: hypothetical protein [Homo sapiens] 36 0.033
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 36 0.033
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.044
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 35 0.057
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.057
gi|153792074 proline rich 12 [Homo sapiens] 35 0.057
gi|28269693 xylosyltransferase I [Homo sapiens] 35 0.074
gi|119395716 forkhead box C1 [Homo sapiens] 35 0.074
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 35 0.074
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 35 0.097
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap... 35 0.097
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 35 0.097
>gi|169166115 PREDICTED: hypothetical protein [Homo sapiens]
Length = 283
Score = 578 bits (1491), Expect = e-165
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MPMAAPRGLPLTFREAPEALHPARAVGRERLRSEAREAAWAASSSRLPQPPRAAGSSSRP 60
MPMAAPRGLPLTFREAPEALHPARAVGRERLRSEAREAAWAASSSRLPQPPRAAGSSSRP
Sbjct: 1 MPMAAPRGLPLTFREAPEALHPARAVGRERLRSEAREAAWAASSSRLPQPPRAAGSSSRP 60
Query: 61 SVAKLALVAPSRGGGGCAELACGERERCCDATNATAVRCCKLPLHAFLDNVGWFVRKLSG 120
SVAKLALVAPSRGGGGCAELACGERERCCDATNATAVRCCKLPLHAFLDNVGWFVRKLSG
Sbjct: 61 SVAKLALVAPSRGGGGCAELACGERERCCDATNATAVRCCKLPLHAFLDNVGWFVRKLSG 120
Query: 121 LLILLVLFAIGYFLQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPAL 180
LLILLVLFAIGYFLQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPAL
Sbjct: 121 LLILLVLFAIGYFLQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPAL 180
Query: 181 LRDEAAAGSQDSLLDSGGGGRGRGGGGRSDPSCASEHEMRVVSPVFLQLPSYEEVKYLPT 240
LRDEAAAGSQDSLLDSGGGGRGRGGGGRSDPSCASEHEMRVVSPVFLQLPSYEEVKYLPT
Sbjct: 181 LRDEAAAGSQDSLLDSGGGGRGRGGGGRSDPSCASEHEMRVVSPVFLQLPSYEEVKYLPT 240
Query: 241 YEESMRLQQLSPGEVVLPVSVLGRPRGGVAAEPDGGEGRYPLI 283
YEESMRLQQLSPGEVVLPVSVLGRPRGGVAAEPDGGEGRYPLI
Sbjct: 241 YEESMRLQQLSPGEVVLPVSVLGRPRGGVAAEPDGGEGRYPLI 283
>gi|169165309 PREDICTED: hypothetical protein [Homo sapiens]
Length = 283
Score = 578 bits (1491), Expect = e-165
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MPMAAPRGLPLTFREAPEALHPARAVGRERLRSEAREAAWAASSSRLPQPPRAAGSSSRP 60
MPMAAPRGLPLTFREAPEALHPARAVGRERLRSEAREAAWAASSSRLPQPPRAAGSSSRP
Sbjct: 1 MPMAAPRGLPLTFREAPEALHPARAVGRERLRSEAREAAWAASSSRLPQPPRAAGSSSRP 60
Query: 61 SVAKLALVAPSRGGGGCAELACGERERCCDATNATAVRCCKLPLHAFLDNVGWFVRKLSG 120
SVAKLALVAPSRGGGGCAELACGERERCCDATNATAVRCCKLPLHAFLDNVGWFVRKLSG
Sbjct: 61 SVAKLALVAPSRGGGGCAELACGERERCCDATNATAVRCCKLPLHAFLDNVGWFVRKLSG 120
Query: 121 LLILLVLFAIGYFLQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPAL 180
LLILLVLFAIGYFLQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPAL
Sbjct: 121 LLILLVLFAIGYFLQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPAL 180
Query: 181 LRDEAAAGSQDSLLDSGGGGRGRGGGGRSDPSCASEHEMRVVSPVFLQLPSYEEVKYLPT 240
LRDEAAAGSQDSLLDSGGGGRGRGGGGRSDPSCASEHEMRVVSPVFLQLPSYEEVKYLPT
Sbjct: 181 LRDEAAAGSQDSLLDSGGGGRGRGGGGRSDPSCASEHEMRVVSPVFLQLPSYEEVKYLPT 240
Query: 241 YEESMRLQQLSPGEVVLPVSVLGRPRGGVAAEPDGGEGRYPLI 283
YEESMRLQQLSPGEVVLPVSVLGRPRGGVAAEPDGGEGRYPLI
Sbjct: 241 YEESMRLQQLSPGEVVLPVSVLGRPRGGVAAEPDGGEGRYPLI 283
>gi|169165719 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 85.9 bits (211), Expect = 4e-17
Identities = 43/45 (95%), Positives = 43/45 (95%)
Query: 219 MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSVLG 263
MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVS G
Sbjct: 1 MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSGWG 45
>gi|154937344 complement component 1, q subcomponent-like 2 [Homo
sapiens]
Length = 287
Score = 41.6 bits (96), Expect = 8e-04
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 142 PRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDS--PALLRDEAAAGSQDSLLDSGGG 199
P+ P +PG R GPPG GP G GPP + DS P L + AG+ S + GG
Sbjct: 77 PKGDPGRPGKPGPR-GPPGEPGPPGPRGPPGEKGDSGRPGLPGLQLTAGTA-SGVGVVGG 134
Query: 200 GRGRGGGGRSDPSCA 214
G G GG + + A
Sbjct: 135 GAGVGGDSEGEVTSA 149
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 40.4 bits (93), Expect = 0.002
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 138 ICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSG 197
+ P P+ P A +RPG PG AG G A P+ + + +EA G+ ++ ++G
Sbjct: 10 VAPGPQGPPEVPAPLAERPGEPGAAG--GEAEGPEGSEGA-----EEAPRGAA-AVKEAG 61
Query: 198 GGGRGRG--GGGRSDPSCASEHEMRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEV 255
GGG RG R E E +P ++P E + +++ SPG
Sbjct: 62 GGGPDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQGGE-----ETSGAQQVEGASPGR- 115
Query: 256 VLPVSVLGRPRGGVAAEPD 274
G PRG EP+
Sbjct: 116 ----GAQGEPRGEAQREPE 130
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 40.0 bits (92), Expect = 0.002
Identities = 43/137 (31%), Positives = 51/137 (37%), Gaps = 24/137 (17%)
Query: 140 PSPR--RYPRGQARPGQRPGPPGGA--GPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLD 195
P+PR R PRG A P P PP G GP G A P A LR G Q L+
Sbjct: 160 PAPRAPRRPRGPATPD--PSPPAGRPHGPAGRAA-PGRRPGCTAQLRAPGRRGRQRLLVH 216
Query: 196 SGGGGRGRGGGGRSDPSCASEHEMRVVSPVFLQLPSYEEVKYLPTYEESMRLQQL----- 250
GGGGR + + R L L + ++ P L QL
Sbjct: 217 PGGGGRRQW-----------QRLARARRAALLALGALAHLRRCPDTGGGQHLHQLLAPGL 265
Query: 251 -SPGEVVLPVSVLGRPR 266
G V P + GRPR
Sbjct: 266 CGDGAAVWPAAHAGRPR 282
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 39.7 bits (91), Expect = 0.003
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 115 VRKLSGLLILLVLFAIGYFLQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
+R+L G +I + + L++ + P P G A P PGPPG G G GPP
Sbjct: 525 IRELCGGMISEQIAQLAAHLRKPLAPGSIGRP-GPAGPPGPPGPPGSIGHPGARGPPGYR 583
Query: 175 DDSPALLRDEAAAGSQDSLLDSGGGGRGRGG 205
+ L D G+Q D G G G G
Sbjct: 584 GPT-GELGDPGPRGNQGDRGDKGAAGAGLDG 613
Score = 32.3 bits (72), Expect = 0.48
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 124 LLVLFAIGYFL-----QRIICPSPRRYPRGQARPGQ-----RPGPPGGAGPLGGAGPP 171
LL+L +G L QR+ P P P +PGQ GPPG GP G G P
Sbjct: 10 LLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAP 67
Score = 30.8 bits (68), Expect = 1.4
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 140 PSPRRYPRGQ-ARPGQRPGPPGGAGPLGGAGPPDDDDDS--PALLRDEAAAGSQDSLLDS 196
P R P+G RPG + G PG AGP G G P D + P L + AG + +
Sbjct: 272 PEGFRGPKGDLGRPGPK-GTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEK 330
Query: 197 GGGG 200
G G
Sbjct: 331 GPNG 334
Score = 29.6 bits (65), Expect = 3.1
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 146 PRG-QARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGGR--G 202
PRG + PG GPPG GP+G GPP +P D G + G GR
Sbjct: 230 PRGLRGLPGPL-GPPGDRGPIGFRGPP-GIPGAPGKAGDRGERGPEGFRGPKGDLGRPGP 287
Query: 203 RGGGGRSDPS 212
+G G + PS
Sbjct: 288 KGTPGVAGPS 297
Score = 28.5 bits (62), Expect = 7.0
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 140 PSPRRYPRGQARPGQR--PGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSG 197
P P+ P +PG+ PG PG G G GPP + A G + SL G
Sbjct: 61 PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPG----------PKGAPGERGSLGPPG 110
Query: 198 GGGRGRGG 205
G G G
Sbjct: 111 PPGLGGKG 118
>gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]
Length = 492
Score = 38.9 bits (89), Expect = 0.005
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 161 GAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGGRGRGGGG 207
GAGP GGA PP P L A A + + L +G GG GGGG
Sbjct: 335 GAGPAGGAAPPPPPP--PGALGSFALAAAANGYLGAGAGGGAGGGGG 379
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 38.1 bits (87), Expect = 0.009
Identities = 36/127 (28%), Positives = 42/127 (33%), Gaps = 26/127 (20%)
Query: 140 PSPRRYPRGQARPGQRPG----PPGGAGPLGGAGPPDDDDDS----PALLRDEAAAGSQD 191
P+P YP G PG P PPG GP PP + P L A S D
Sbjct: 287 PAPH-YPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345
Query: 192 SLLDSGGGGRGRG-------------GGGRSDPSCASEHEMRVVSP----VFLQLPSYEE 234
+ D GGG G GG R+ P+ A P L P Y
Sbjct: 346 KVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYT 405
Query: 235 VKYLPTY 241
+ P Y
Sbjct: 406 APFYPGY 412
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 37.7 bits (86), Expect = 0.011
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 156 PGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGGRGRGGGG 207
PG PG A G A PP+++++ + A LL+ G GG G GGGG
Sbjct: 22 PGSPGSAAR-GRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGG 72
Score = 28.9 bits (63), Expect = 5.3
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 148 GQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAG----SQDSLLDSGGG-GRG 202
G + R PG A G G + + P R G S S++ SGG G G
Sbjct: 131 GSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSVVSSGGDEGYG 190
Query: 203 RGGGGRSDPS 212
GGGG S S
Sbjct: 191 TGGGGSSATS 200
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 37.7 bits (86), Expect = 0.011
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 156 PGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGGRGRGGGG 207
PG PG A G A PP+++++ + A LL+ G GG G GGGG
Sbjct: 22 PGSPGSAAR-GRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGG 72
Score = 28.9 bits (63), Expect = 5.3
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 148 GQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAG----SQDSLLDSGGG-GRG 202
G + R PG A G G + + P R G S S++ SGG G G
Sbjct: 131 GSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSVVSSGGDEGYG 190
Query: 203 RGGGGRSDPS 212
GGGG S S
Sbjct: 191 TGGGGSSATS 200
>gi|61835232 growth differentiation factor 7 preproprotein [Homo
sapiens]
Length = 450
Score = 37.4 bits (85), Expect = 0.015
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 31 LRSEAREAAWAASSSRLPQP------PRAAGSSSRPSVAKLALVAPSRGGGGCAELACGE 84
+R++AR A +S LP P PRA R LA ++G GG A G
Sbjct: 284 IRAQARALGAALASEPLPDPGTGTASPRAVIGGRRRRRTALAGTRTAQGSGGGAGRGHGR 343
Query: 85 RERCCDATNATAVRCCKLPLHAFLDNVGW 113
R R RC + PLH +GW
Sbjct: 344 RGRS---------RCSRKPLHVDFKELGW 363
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.0 bits (84), Expect = 0.020
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
P+G+ GPPG AGP G GPP DD
Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDD 1314
Score = 32.3 bits (72), Expect = 0.48
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGP-----PDDDDDSPALLRDEAAAGSQDSLL 194
P R +G+A P GPPG GP G GP P P + AG
Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ----- 1340
Query: 195 DSGGGGRGRGG 205
D GG +G G
Sbjct: 1341 DGVGGDKGEDG 1351
Score = 30.4 bits (67), Expect = 1.8
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 142 PRRYPRGQARPGQR-----PGPPGGAGPLGGAGPP 171
PR P +PG PGP G GP G GPP
Sbjct: 668 PRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPP 702
Score = 30.0 bits (66), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGP 170
P+ + P+G + PGPPG GP G GP
Sbjct: 908 PTGKPGPKGTSGGDGPPGPPGERGPQGPQGP 938
Score = 30.0 bits (66), Expect = 2.4
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 143 RRYPRGQARPGQRP--GPPGGAGPLGGAGPP 171
R P Q PG + G PG AGPLG GPP
Sbjct: 1485 RGLPGTQGSPGAKGDGGIPGPAGPLGPPGPP 1515
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDD 173
P G A P GPPG GP G G P D
Sbjct: 455 PPGPAGPAGIMGPPGLQGPTGPPGDPGD 482
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDD 173
P+ R RG P +PGP G +G G GPP +
Sbjct: 896 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGE 929
Score = 29.6 bits (65), Expect = 3.1
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 152 PGQRPGPPGGAGPLGGAGPP 171
PGQ PGPPG +G G GPP
Sbjct: 1353 PGQ-PGPPGPSGEAGPPGPP 1371
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAG 169
P G+A P PGPPG GP G AG
Sbjct: 1361 PSGEAGP---PGPPGKRGPPGAAG 1381
Score = 29.3 bits (64), Expect = 4.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 140 PSPRRYPRGQ-ARPGQR--PGPPGGAGPLGGAGPPDD 173
P P+G+ PGQ+ PGP G GP G GPP +
Sbjct: 689 PKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGE 725
Score = 29.3 bits (64), Expect = 4.1
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGG 200
P+G A GP G GP G AG P +D D + G + S D G G
Sbjct: 1109 PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI----GEPGQKGSKGDKGENG 1159
Score = 28.9 bits (63), Expect = 5.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPP 171
P+G+A P PGP G AG G G P
Sbjct: 827 PKGRAGPTGDPGPSGQAGEKGKLGVP 852
Score = 28.9 bits (63), Expect = 5.3
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 134 LQRIICPSPRRYPRGQARPGQRPGPPGGAGPLG--GAGPPDDDDDSPALLRDEAAAGSQD 191
LQ + P + G P PGPPG GP G GA P S + G
Sbjct: 1211 LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPG 1270
Query: 192 SLLDSGGGGRGRGGGGRSD 210
+ G G GG + +
Sbjct: 1271 EAGNPGPPGEAGVGGPKGE 1289
Score = 28.1 bits (61), Expect = 9.1
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 157 GPPGGAGPLGGAGPP 171
GPPG AGP G GPP
Sbjct: 454 GPPGPAGPAGIMGPP 468
Score = 28.1 bits (61), Expect = 9.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPP 171
PRG P PG PG G G GPP
Sbjct: 662 PRGLLGPRGTPGAPGQPGMAGVDGPP 687
Score = 28.1 bits (61), Expect = 9.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
P G+ P GP G GP G GPP D
Sbjct: 926 PPGERGPQGPQGPVGFPGPKGPPGPPGKD 954
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.0 bits (84), Expect = 0.020
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
P+G+ GPPG AGP G GPP DD
Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDD 1263
Score = 32.3 bits (72), Expect = 0.48
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGP-----PDDDDDSPALLRDEAAAGSQDSLL 194
P R +G+A P GPPG GP G GP P P + AG
Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ----- 1289
Query: 195 DSGGGGRGRGG 205
D GG +G G
Sbjct: 1290 DGVGGDKGEDG 1300
Score = 30.4 bits (67), Expect = 1.8
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 142 PRRYPRGQARPGQR-----PGPPGGAGPLGGAGPP 171
PR P +PG PGP G GP G GPP
Sbjct: 617 PRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPP 651
Score = 30.0 bits (66), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGP 170
P+ + P+G + PGPPG GP G GP
Sbjct: 857 PTGKPGPKGTSGGDGPPGPPGERGPQGPQGP 887
Score = 30.0 bits (66), Expect = 2.4
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 143 RRYPRGQARPGQRP--GPPGGAGPLGGAGPP 171
R P Q PG + G PG AGPLG GPP
Sbjct: 1434 RGLPGTQGSPGAKGDGGIPGPAGPLGPPGPP 1464
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDD 173
P G A P GPPG GP G G P D
Sbjct: 404 PPGPAGPAGIMGPPGLQGPTGPPGDPGD 431
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDD 173
P+ R RG P +PGP G +G G GPP +
Sbjct: 845 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGE 878
Score = 29.6 bits (65), Expect = 3.1
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 152 PGQRPGPPGGAGPLGGAGPP 171
PGQ PGPPG +G G GPP
Sbjct: 1302 PGQ-PGPPGPSGEAGPPGPP 1320
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAG 169
P G+A P PGPPG GP G AG
Sbjct: 1310 PSGEAGP---PGPPGKRGPPGAAG 1330
Score = 29.3 bits (64), Expect = 4.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 140 PSPRRYPRGQ-ARPGQR--PGPPGGAGPLGGAGPPDD 173
P P+G+ PGQ+ PGP G GP G GPP +
Sbjct: 638 PKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGE 674
Score = 29.3 bits (64), Expect = 4.1
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGG 200
P+G A GP G GP G AG P +D D + G + S D G G
Sbjct: 1058 PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI----GEPGQKGSKGDKGENG 1108
Score = 28.9 bits (63), Expect = 5.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPP 171
P+G+A P PGP G AG G G P
Sbjct: 776 PKGRAGPTGDPGPSGQAGEKGKLGVP 801
Score = 28.9 bits (63), Expect = 5.3
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 134 LQRIICPSPRRYPRGQARPGQRPGPPGGAGPLG--GAGPPDDDDDSPALLRDEAAAGSQD 191
LQ + P + G P PGPPG GP G GA P S + G
Sbjct: 1160 LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPG 1219
Query: 192 SLLDSGGGGRGRGGGGRSD 210
+ G G GG + +
Sbjct: 1220 EAGNPGPPGEAGVGGPKGE 1238
Score = 28.1 bits (61), Expect = 9.1
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 157 GPPGGAGPLGGAGPP 171
GPPG AGP G GPP
Sbjct: 403 GPPGPAGPAGIMGPP 417
Score = 28.1 bits (61), Expect = 9.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPP 171
PRG P PG PG G G GPP
Sbjct: 611 PRGLLGPRGTPGAPGQPGMAGVDGPP 636
Score = 28.1 bits (61), Expect = 9.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
P G+ P GP G GP G GPP D
Sbjct: 875 PPGERGPQGPQGPVGFPGPKGPPGPPGKD 903
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.0 bits (84), Expect = 0.020
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
P+G+ GPPG AGP G GPP DD
Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDD 1302
Score = 32.3 bits (72), Expect = 0.48
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGP-----PDDDDDSPALLRDEAAAGSQDSLL 194
P R +G+A P GPPG GP G GP P P + AG
Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ----- 1328
Query: 195 DSGGGGRGRGG 205
D GG +G G
Sbjct: 1329 DGVGGDKGEDG 1339
Score = 30.4 bits (67), Expect = 1.8
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 142 PRRYPRGQARPGQR-----PGPPGGAGPLGGAGPP 171
PR P +PG PGP G GP G GPP
Sbjct: 656 PRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPP 690
Score = 30.0 bits (66), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGP 170
P+ + P+G + PGPPG GP G GP
Sbjct: 896 PTGKPGPKGTSGGDGPPGPPGERGPQGPQGP 926
Score = 30.0 bits (66), Expect = 2.4
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 143 RRYPRGQARPGQRP--GPPGGAGPLGGAGPP 171
R P Q PG + G PG AGPLG GPP
Sbjct: 1473 RGLPGTQGSPGAKGDGGIPGPAGPLGPPGPP 1503
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDD 173
P G A P GPPG GP G G P D
Sbjct: 443 PPGPAGPAGIMGPPGLQGPTGPPGDPGD 470
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDD 173
P+ R RG P +PGP G +G G GPP +
Sbjct: 884 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGE 917
Score = 29.6 bits (65), Expect = 3.1
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 152 PGQRPGPPGGAGPLGGAGPP 171
PGQ PGPPG +G G GPP
Sbjct: 1341 PGQ-PGPPGPSGEAGPPGPP 1359
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAG 169
P G+A P PGPPG GP G AG
Sbjct: 1349 PSGEAGP---PGPPGKRGPPGAAG 1369
Score = 29.3 bits (64), Expect = 4.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 140 PSPRRYPRGQ-ARPGQR--PGPPGGAGPLGGAGPPDD 173
P P+G+ PGQ+ PGP G GP G GPP +
Sbjct: 677 PKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGE 713
Score = 29.3 bits (64), Expect = 4.1
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGG 200
P+G A GP G GP G AG P +D D + G + S D G G
Sbjct: 1097 PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI----GEPGQKGSKGDKGENG 1147
Score = 28.9 bits (63), Expect = 5.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPP 171
P+G+A P PGP G AG G G P
Sbjct: 815 PKGRAGPTGDPGPSGQAGEKGKLGVP 840
Score = 28.9 bits (63), Expect = 5.3
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 134 LQRIICPSPRRYPRGQARPGQRPGPPGGAGPLG--GAGPPDDDDDSPALLRDEAAAGSQD 191
LQ + P + G P PGPPG GP G GA P S + G
Sbjct: 1199 LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPG 1258
Query: 192 SLLDSGGGGRGRGGGGRSD 210
+ G G GG + +
Sbjct: 1259 EAGNPGPPGEAGVGGPKGE 1277
Score = 28.1 bits (61), Expect = 9.1
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 157 GPPGGAGPLGGAGPP 171
GPPG AGP G GPP
Sbjct: 442 GPPGPAGPAGIMGPP 456
Score = 28.1 bits (61), Expect = 9.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPP 171
PRG P PG PG G G GPP
Sbjct: 650 PRGLLGPRGTPGAPGQPGMAGVDGPP 675
Score = 28.1 bits (61), Expect = 9.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
P G+ P GP G GP G GPP D
Sbjct: 914 PPGERGPQGPQGPVGFPGPKGPPGPPGKD 942
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 37.0 bits (84), Expect = 0.020
Identities = 34/99 (34%), Positives = 38/99 (38%), Gaps = 28/99 (28%)
Query: 140 PSPRRYPRGQAR--------------------PGQRPGPPGGAGPLGGAGPPDDDDDSPA 179
PSP R RG+ R P PG PG G LGG GP + PA
Sbjct: 535 PSPGRSRRGKTRHRKASAKGSCGDLPGLRTAVPPHEPGGPGSPGGLGG-GPSAWEACPPA 593
Query: 180 L------LRDEAAAGSQDSLLDSGGGGRGRGG-GGRSDP 211
L L + S LL + G RGRG GG DP
Sbjct: 594 LRGLHHDLLLRKMSSSSPDLLSAALGSRGRGATGGAGDP 632
Score = 29.3 bits (64), Expect = 4.1
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 148 GQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDE----AAAGSQDSLLDSGGGGRGR 203
G PG P G P G+ P DSP + E G LL +G G
Sbjct: 628 GAGDPGSPPPARGDTPPSEGSAPGSTSPDSPGGAKGEPPPPVGPGEGVGLLGTGREGTSG 687
Query: 204 GGGGRS 209
GG R+
Sbjct: 688 RGGSRA 693
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 37.0 bits (84), Expect = 0.020
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGPP---DDDDDSPAL-LRDEAAAGSQDSLLD 195
PS +R G+ R R GGAGP G AG D+ SPA R + +AG
Sbjct: 30 PSGKR--GGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGKRGKKSAGC------ 81
Query: 196 SGGGGRGRGGGGRSDPSCASEHE 218
GGGG G GGG S +E
Sbjct: 82 GGGGGAGGGGGSSSGGGSPQSYE 104
>gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 36.2 bits (82), Expect = 0.033
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 81 ACGERERCCDATNATAVRCC-------KLPLHAFLDNVGWFVRKLSGLLILLVLFAIGYF 133
+C +R+ C D + TA+R +L L F D+ LL + G
Sbjct: 10 SCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEA-----------LLSVSRSGVG 58
Query: 134 LQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSP 178
+ P P R R QA P PGG GGAG P P
Sbjct: 59 RDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADP 103
>gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 36.2 bits (82), Expect = 0.033
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 81 ACGERERCCDATNATAVRCC-------KLPLHAFLDNVGWFVRKLSGLLILLVLFAIGYF 133
+C +R+ C D + TA+R +L L F D+ LL + G
Sbjct: 10 SCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEA-----------LLSVSRSGVG 58
Query: 134 LQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSP 178
+ P P R R QA P PGG GGAG P P
Sbjct: 59 RDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADP 103
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 36.2 bits (82), Expect = 0.033
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 147 RGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGGRGRGG- 205
+G P R GP G GP G GPP D DD P + A G + G G G
Sbjct: 1345 KGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPG-----MRGPEGAMGLPGM 1399
Query: 206 GGRSDPSCASE 216
G S P C E
Sbjct: 1400 RGPSGPGCKGE 1410
Score = 32.0 bits (71), Expect = 0.63
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAG-----PPDDDDDSP 178
PRG+ P PGPPG +GP G AG P D D P
Sbjct: 1225 PRGKKGP---PGPPGSSGPPGPAGATGRAPKDIPDPGP 1259
Score = 30.8 bits (68), Expect = 1.4
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 142 PRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGGR 201
P + RG+ +PGPPG GP G G P L D+ GS SG G
Sbjct: 1009 PPGFHRGEPGEKGQPGPPGPPGPPGSTG-LRGFIGFPGLPGDQGEPGSPGPPGFSGIDGA 1067
Query: 202 GRGGGGRSDPS 212
G + DP+
Sbjct: 1068 RGPKGNKGDPA 1078
Score = 30.4 bits (67), Expect = 1.8
Identities = 27/92 (29%), Positives = 30/92 (32%), Gaps = 19/92 (20%)
Query: 146 PRGQARPGQRPGPPG------GAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSG-- 197
P Q PG PGPPG GP G G P P + + G SG
Sbjct: 1047 PGDQGEPGS-PGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQ 1105
Query: 198 --------GGGRGRGG--GGRSDPSCASEHEM 219
G GR G G P C +H M
Sbjct: 1106 GLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGM 1137
Score = 30.0 bits (66), Expect = 2.4
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 140 PSPRRYPRGQARPGQR--PGPPGGAGPLGGAGP 170
P PR P G R PG PGG G LG GP
Sbjct: 130 PGPRGKPGMSGHNGSRGDPGFPGGRGALGPGGP 162
Score = 29.3 bits (64), Expect = 4.1
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 123 ILLVLFAIGYFL---QRIICPSPRRY--------PRGQARPGQRPGPPGGAGPLGGAGP 170
++L+LF++ Y ++ I P R +G P PGP G GPLG GP
Sbjct: 26 LILILFSVQYVYGSGKKYIGPCGGRDCSVCHCVPEKGSRGPPGPPGPQGPIGPLGAPGP 84
Score = 29.3 bits (64), Expect = 4.1
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 147 RGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDS--------GG 198
+G P GPPG G G +GPP + ++ + D G
Sbjct: 526 KGDPGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPGQPGS 585
Query: 199 GGRGRGGGGRSDPSCASEHE 218
GR G + DP +HE
Sbjct: 586 HGRDGHAGEKGDPGPPGDHE 605
Score = 28.9 bits (63), Expect = 5.3
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 140 PSPRRYPRGQARPGQR-----PGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLL 194
P P + PG++ PG G G G GPP D+ + A++ + G
Sbjct: 923 PGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEM-AIISQKGTPGEPGPPG 981
Query: 195 DSG-GGGRGRGG-----GGRSDP 211
D G G RG G G R +P
Sbjct: 982 DDGFPGERGDKGTPGMQGRRGEP 1004
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.8 bits (81), Expect = 0.044
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPAL--LRDEAAAGSQDSLLDSGGGGRGR 203
P G + P PGPPG GP G GPP + + A + G D G G+
Sbjct: 180 PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPG 239
Query: 204 GGGGRSDP 211
G R P
Sbjct: 240 RPGERGPP 247
Score = 35.0 bits (79), Expect = 0.074
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 140 PSPRRYPRGQARPGQR--PGPPGGAGPLGGAGPPDDDD-----DSPALLRDEAAAGSQDS 192
PS R RG PG+R GPPG AGP G G P +D +P + A G Q
Sbjct: 672 PSGARGERGF--PGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGM 729
Query: 193 LLDSGGGGRGRGGGGRSD 210
+ G G G R D
Sbjct: 730 PGERGAAGLPGPKGDRGD 747
Score = 34.7 bits (78), Expect = 0.097
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 146 PRGQARPGQRP---GPPGGAGPLGGAGPP--DDDDDSPALLRDEAAAGSQDSL-LDSGGG 199
PRG+ P RP GPPG GP G G P D +P + AG + + L G
Sbjct: 909 PRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRG 968
Query: 200 GRG-------RGGGGRSDPSCAS 215
RG G G+ PS AS
Sbjct: 969 ERGFPGLPGPSGEPGKQGPSGAS 991
Score = 32.0 bits (71), Expect = 0.63
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 140 PSPRRYPRGQARPGQ--RPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSG 197
P P P Q G GPPG GP G AGPP + E A G++ S G
Sbjct: 976 PGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESG-------REGAPGAEGSPGRDG 1028
Query: 198 GGGRGRGGGGRSDPS 212
G +G G + P+
Sbjct: 1029 SPG-AKGDRGETGPA 1042
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 144 RYPRGQARPGQR---PGPPGGAGPLGGAGPP 171
R PRG A P R PG PG GP G GPP
Sbjct: 120 RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPP 150
Score = 30.8 bits (68), Expect = 1.4
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAG-----PPDDDDDSPALLRDEAAAGSQDSLL 194
P + P G A RPGPPG G G AG P P + G ++
Sbjct: 549 PDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVG 608
Query: 195 DSGGGGR--GRGGGGRSDPSCASEHEMRVVSPVFLQLP 230
+G G +G G + P+ + SP F LP
Sbjct: 609 PAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP 646
Score = 30.8 bits (68), Expect = 1.4
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 140 PSPRRYPRG-QARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGG 198
PS P G + PG R G PG GP G AGPP D P + AG++ G
Sbjct: 786 PSGPAGPTGARGAPGDR-GEPGPPGPAGFAGPP-GADGQPGAKGEPGDAGAKGDAGPPGP 843
Query: 199 GG 200
G
Sbjct: 844 AG 845
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGP 170
P G A P PGPPG AG GG GP
Sbjct: 888 PSGNAGP---PGPPGPAGKEGGKGP 909
Score = 30.0 bits (66), Expect = 2.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPP 171
PRG+ GPPG GP G GPP
Sbjct: 1167 PRGRTGDAGPVGPPGPPGPPGPPGPP 1192
Score = 29.3 bits (64), Expect = 4.1
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDD--DDSPALLRDEAAAGSQDSLLDSGGGGRGR 203
PRG P G PG GP G AGP + D P A G + + G R
Sbjct: 360 PRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPG----IAGAPGFPGAR 415
Query: 204 GGGGRSDP 211
G G P
Sbjct: 416 GPSGPQGP 423
Score = 29.3 bits (64), Expect = 4.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 148 GQARPGQRPGPPGGAGPLGGAGPPDD 173
G A P PG PG GP+G AG D
Sbjct: 1040 GPAGPPGAPGAPGAPGPVGPAGKSGD 1065
Score = 28.9 bits (63), Expect = 5.3
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 146 PRGQARPGQRPGP------PGGAGPLGGAGPP 171
P G A P PGP PG G G AGPP
Sbjct: 840 PPGPAGPAGPPGPIGNVGAPGAKGARGSAGPP 871
Score = 28.5 bits (62), Expect = 7.0
Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 142 PRRYPRGQARPGQRPGPPGGAG------------PLGGAGPPDDDDDSPALLRDEAAAGS 189
PR P + RPG PGP G G P G AGPP P + + AG
Sbjct: 303 PRGLPGERGRPGA-PGPAGARGNDGATGAAGPPGPTGPAGPP----GFPGAVGAKGEAGP 357
Query: 190 QDSLLDSGGGGRGRGGGGRSDPSCAS 215
Q G G RG G P+ A+
Sbjct: 358 QGPRGSEGPQG-VRGEPGPPGPAGAA 382
Score = 28.5 bits (62), Expect = 7.0
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDD-DDDSPALLRDE----AAAGSQDSLLDSGGGG 200
P G P PG PG G G AGP + P +R E AG+ + G G
Sbjct: 333 PPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADG 392
Query: 201 RGRGGGGRSDPSCA 214
+ G P A
Sbjct: 393 QPGAKGANGAPGIA 406
Score = 28.5 bits (62), Expect = 7.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 143 RRYPRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
+R RG+ P PGPPG G G G P D
Sbjct: 468 KRGARGEPGPTGLPGPPGERGGPGSRGFPGAD 499
Score = 28.5 bits (62), Expect = 7.0
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
P P P G+ P GP G GP G AG P D
Sbjct: 1120 PGPPGSP-GEQGPSGASGPAGPRGPPGSAGAPGKD 1153
Score = 28.1 bits (61), Expect = 9.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 144 RYPRGQARPGQRPGPPGGAGPLGGAGPPDD 173
R P G PG PGP G +G G G D
Sbjct: 415 RGPSGPQGPGGPPGPKGNSGEPGAPGSKGD 444
Score = 28.1 bits (61), Expect = 9.1
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 140 PSPRRYPRGQARPGQR-----PGPPGG---AGPLGGAGPPDDDD--DSPALLRDEAAAGS 189
P + P Q PG+R PGP G AGP G G P D + AG+
Sbjct: 718 PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGA 777
Query: 190 QDSLLDSGGGGRGRGGGGRSDPSCASE 216
+SG G G R P E
Sbjct: 778 PGDKGESGPSGPAGPTGARGAPGDRGE 804
Score = 28.1 bits (61), Expect = 9.1
Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGP------PDDDDD----SPALLRDEAAAGSQDSLLD 195
P G P PG G +GP G AGP P D + PA A Q
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG 827
Query: 196 SGGGGRGRGGGGRSDPS 212
G +G G P+
Sbjct: 828 EPGDAGAKGDAGPPGPA 844
Score = 28.1 bits (61), Expect = 9.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGP 170
P +P R G PGP G AGP G GP
Sbjct: 871 PGATGFPGAAGRVGP-PGPSGNAGPPGPPGP 900
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 35.4 bits (80), Expect = 0.057
Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 145 YPRGQARPGQRPGPPGGAGPLGGAGPPDDDDD-----SPALLRDEAAA-----GSQDSLL 194
+PRG A P Q P PP PLGG + D PA DE A Q
Sbjct: 33 FPRG-AGPAQPPAPPAAPEPLGGICEHETSIDISAYIDPAAFNDEFLADLFQHSRQQEKA 91
Query: 195 DSGGGGRGRGGGGRSD 210
+ G G GGGG D
Sbjct: 92 KAAVGPTGGGGGGDFD 107
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.4 bits (80), Expect = 0.057
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 142 PRRYPRGQARPGQRPGPPGGAGPLGGAGPPDD--DDDSPALLRDEAAAGSQDSLLDSGGG 199
P+ P PG PGPPG GP G GPP D DD P G SG
Sbjct: 1334 PKGSPGPVGFPGD-PGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPG---PSGPP 1389
Query: 200 GRGRGGGGRSDP 211
G+ RG G + P
Sbjct: 1390 GK-RGPPGPAGP 1400
Score = 33.1 bits (74), Expect = 0.28
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
P+G+ GP G AGP G GPP DD
Sbjct: 1304 PKGERGEKGESGPSGAAGPPGPKGPPGDD 1332
Score = 32.3 bits (72), Expect = 0.48
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDD--DDDSPALLRDEAAAGSQDSLL-----DSGG 198
P G P PGPPG GP G G P + P L + G ++L GG
Sbjct: 470 PPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGG 529
Query: 199 GGRGRGG 205
G G G
Sbjct: 530 GDAGSKG 536
Score = 31.6 bits (70), Expect = 0.82
Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 14/83 (16%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGP--------------PDDDDDSPALLRDEAAAGSQD 191
P G A P GPPG GP G GP P D P D+ G
Sbjct: 1316 PSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTG 1375
Query: 192 SLLDSGGGGRGRGGGGRSDPSCA 214
S +G G G R P A
Sbjct: 1376 SPGPTGEPGPSGPPGKRGPPGPA 1398
Score = 31.2 bits (69), Expect = 1.1
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGG--GGRG- 202
P G P PG G GP GG G P + + E + L GG G +G
Sbjct: 1253 PPGPRGPSGAPGADGPQGPPGGIGNPGAVGE-----KGEPGEAGEPGLPGEGGPPGPKGE 1307
Query: 203 RGGGGRSDPSCAS 215
RG G S PS A+
Sbjct: 1308 RGEKGESGPSGAA 1320
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDDDD 176
P+G A GP G GP G GPP +D D
Sbjct: 1127 PQGPAGRDGLQGPVGLPGPAGPVGPPGEDGD 1157
Score = 30.4 bits (67), Expect = 1.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGP 170
P R +G++ P GPPG GP G GP
Sbjct: 1304 PKGERGEKGESGPSGAAGPPGPKGPPGDDGP 1334
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGPP 171
P P P GQ PGP G GP G GPP
Sbjct: 690 PGPPGPPGVTGMDGQ-PGPKGNVGPQGEPGPP 720
Score = 29.3 bits (64), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 142 PRRYPRGQARPGQR--PGPPGGAGPLGGAGP 170
P +P + PG++ GPPG GP+G GP
Sbjct: 761 PPGHPGKEGPPGEKGGQGPPGPQGPIGYPGP 791
Score = 29.3 bits (64), Expect = 4.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDDD 174
P G+ P GP G GP G GPP D
Sbjct: 944 PPGERGPNGPQGPTGFPGPKGPPGPPGKD 972
Score = 29.3 bits (64), Expect = 4.1
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 147 RGQARPGQRPGPPGGAGPLGGAGPPDDDDDS-----------PALLRDEAAAGSQDSLLD 195
+G P PGPPG G G GPP + ++ P A G+
Sbjct: 1212 KGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGP 1271
Query: 196 SGGGGRGRGGGGRSDPSCASE 216
GG G G + +P A E
Sbjct: 1272 PGGIGNPGAVGEKGEPGEAGE 1292
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAG 169
P P P PG+R GPPG AGP G G
Sbjct: 1377 PGPTGEPGPSGPPGKR-GPPGPAGPEGRQG 1405
Score = 28.9 bits (63), Expect = 5.3
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 146 PRGQARPGQRPGPPGG---------AGPLGGAGPPDD 173
P+G P PGPPG GP G GPP +
Sbjct: 707 PKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGE 743
Score = 28.9 bits (63), Expect = 5.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 146 PRGQARPGQ---RPGPPGGAGPLGGAGPPDD 173
PRG+ P +PGP G +G G AGPP +
Sbjct: 917 PRGERGPRGITGKPGPKGNSGGDGPAGPPGE 947
Score = 28.5 bits (62), Expect = 7.0
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 140 PSPRRYPRGQARPGQRP--GPPGGAGPLGGAGPP 171
P + P Q PG + GPPG GPLG G P
Sbjct: 720 PGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLP 753
Score = 28.1 bits (61), Expect = 9.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGPP 171
P +R P G A P R G G G G GPP
Sbjct: 1388 PPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPP 1419
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 35.4 bits (80), Expect = 0.057
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 145 YPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGGRGRG 204
YP R P GG P GAG P S A A+G +GGGG G G
Sbjct: 320 YPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGA---TAGASGRATGPEAAGGGGAGGG 376
Query: 205 GGG 207
GGG
Sbjct: 377 GGG 379
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 35.0 bits (79), Expect = 0.074
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 160 GGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGGRGRGGGGR 208
GGA GG PP +PA R+ ++ + GGGG G GGGGR
Sbjct: 47 GGAAVGGGEQPPP----APAPRRERRDLPAEPAAARGGGGGGGGGGGGR 91
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 35.0 bits (79), Expect = 0.074
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 145 YPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPALLRDEAAAGSQDSLLDSGGGGRGRG 204
Y G+ R G G PGGAG G A DD P + S SL GGGG G
Sbjct: 403 YAAGE-RGGHLQGAPGGAG--GSAV----DDPLPDYSLPPVTSSSSSSLSHGGGGG--GG 453
Query: 205 GGGRSDPSCASEHEMRVVS 223
GGG+ + H+ R+ S
Sbjct: 454 GGGQEAGHHPAAHQGRLTS 472
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 35.0 bits (79), Expect = 0.074
Identities = 46/180 (25%), Positives = 60/180 (33%), Gaps = 36/180 (20%)
Query: 44 SSRLPQPPRAAGSSSRPSVAKL-----ALVAPSRGGGGCAELACGERERCCDATN----- 93
+SR P PP + +SS S A A PS CA A T
Sbjct: 284 TSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDL 343
Query: 94 -ATAVRCCKLPLHAFLDNVGWFVRKLSGLLILLVL--------FAIGYFLQRIICPSPRR 144
A C + +N F +LS L+ L + A Y+ + ++
Sbjct: 344 LAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQ-----QQQ 398
Query: 145 YPRGQARPGQRPGPPGGAGPLGGAGPPDDD---------DDSPALLRDEAAAGSQDSLLD 195
+G A P Q P PP P G A PP DSP +A DSL D
Sbjct: 399 QQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVF---DAPPSPPDSLSD 455
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 34.7 bits (78), Expect = 0.097
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 146 PRGQARPGQ--RPGPPGGAGPLGGAGP-PDDDDDSPALLRDEAAAGSQDSLLDSGGGGRG 202
P PG R GPPG AG G AGP + + P LR + GS + D G G
Sbjct: 905 PGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGD--PGSHGRVGDRGPAGPP 962
Query: 203 RGGGGRSDP 211
G G + DP
Sbjct: 963 GGPGDKGDP 971
Score = 31.2 bits (69), Expect = 1.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPPDD 173
P G A P PGP G GP G G P D
Sbjct: 442 PPGSAGPPGSPGPQGSTGPQGIRGQPGD 469
Score = 30.8 bits (68), Expect = 1.4
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 148 GQARPGQRPGPPGGAGPLGGAGP--PDDDDDSPALLRDEAAAGSQDSLLDSGGGGRGRGG 205
G P GPPG GP+G GP P +D +P + A G + D G G
Sbjct: 1026 GDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPG---RDGAVGERGDRGDPGPAGLPGSQ 1082
Query: 206 GGRSDP 211
G P
Sbjct: 1083 GAPGTP 1088
Score = 28.9 bits (63), Expect = 5.3
Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 31/103 (30%)
Query: 140 PSPRRYPRGQARPGQRPGP---------------PGGAGPLGGAGPPDDDDDS------P 178
P + PRG+ P RPGP PG GP G P D S
Sbjct: 136 PPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQM 195
Query: 179 ALLRDEAAAGSQDSLLDSGGGGRG----------RGGGGRSDP 211
A L +++ GSQ L+ G G +GG G + P
Sbjct: 196 AGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGP 238
Score = 28.5 bits (62), Expect = 7.0
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 140 PSPRRYPRGQARPGQR--PGPPGGAGPLGGAG 169
P P P +PG + PG PG GPLG G
Sbjct: 680 PGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRG 711
Score = 28.5 bits (62), Expect = 7.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 146 PRGQARPGQRPGPPGGAGPLGGAGPP 171
PRG P G G GPLG GPP
Sbjct: 1174 PRGPPGPVGPSGKEGNPGPLGPIGPP 1199
Score = 28.1 bits (61), Expect = 9.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 148 GQARPGQRPGPPGGAGPLGGAGP 170
G P PG PG GP+G GP
Sbjct: 234 GPTGPPGEPGDPGPMGPIGSRGP 256
Score = 28.1 bits (61), Expect = 9.1
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 140 PSPRRYPRGQARPGQRPGPPGGAGPLGGAGPP 171
P P P Q PG PGP G G G G P
Sbjct: 1073 PGPAGLPGSQGAPGT-PGPVGAPGDAGQRGDP 1103
>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 34.7 bits (78), Expect = 0.097
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 184 EAAAGSQDSLLDSGGGGRGRGGGGRSDPSCASEHEMRVVSPVFLQLPSYEEVKYLPTYE 242
+A G + + GGGG+G GGGG D + ++ S P EE Y+ T+E
Sbjct: 349 QAVGGEGEKISGGGGGGKGGGGGGAGDGT--ECRDIIAKSQGSRDPPKVEEAHYITTHE 405
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 34.7 bits (78), Expect = 0.097
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 160 GGAGPLGGAG---PPDDDDDSPALLRDEAAAGSQDSLLDSGGGGRGRGGGG 207
GG P +G P D+DDD EAA G++++ GGGG G G G
Sbjct: 544 GGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEA--RGGGGGLGARGSG 592
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
Query: 150 ARPGQR------PGPPGGAGPLGGAG 169
A PG R PGPPGGA GGAG
Sbjct: 611 AAPGPRENSPVAPGPPGGAAAPGGAG 636
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,639,864
Number of Sequences: 37866
Number of extensions: 909638
Number of successful extensions: 14943
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 7963
Number of HSP's gapped (non-prelim): 5863
length of query: 283
length of database: 18,247,518
effective HSP length: 101
effective length of query: 182
effective length of database: 14,423,052
effective search space: 2624995464
effective search space used: 2624995464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.