Guide to the Human Genome
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Name: LOC401097 Sequence: fasta or formatted (154aa) NCBI GI: 169165719
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {283aa} PREDICTED: hypothetical protein
alt prot {283aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          9           3
 C cysteine            3.9          6           1
 D aspartate           1.3          2           1
 E glutamate           4.5          7           2
 F phenylalanine       2.6          4           1
 G glycine             9.7         15           2
 H histidine           0.6          1           1
 I isoleucine          1.3          2           1
 K lysine              4.5          7           1
 L leucine            11.7         18           2
 M methionine          1.3          2           1
 N asparagine          1.9          3           1
 P proline            10.4         16           1
 Q glutamine           1.9          3           2
 R arginine            9.1         14           2
 S serine              9.7         15           2
 T threonine           2.6          4           1
 V valine             10.4         16           2
 W tryptophan          2.6          4           1
 Y tyrosine            3.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC401097             0.205   PREDICTED: hypothetical protein 
LOC401097             0.205   PREDICTED: hypothetical protein 
LOC100287330          0.020   PREDICTED: hypothetical protein XP_002342702 
LOC100293575          0.017   PREDICTED: hypothetical protein 
LOC100290681          0.017   PREDICTED: hypothetical protein XP_002346859 
ARMC5                 0.013   armadillo repeat containing 5 isoform b 
MYO9B                 0.010   myosin IXB isoform 1 
NOTCH2                0.010   notch 2 preproprotein 
NOV                   0.010   nephroblastoma overexpressed precursor 
LOC100287390          0.007   PREDICTED: hypothetical protein XP_002342820 
LOC100287390          0.007   PREDICTED: hypothetical protein 
PCYT2                 0.007   phosphate cytidylyltransferase 2, ethanolamine 
MIER2                 0.007   mesoderm induction early response 1, family member 2...
GOLGA6D               0.007   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.007   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6B               0.007   golgi autoantigen, golgin subfamily a, 6B 
GOLGA6                0.007   golgi autoantigen, golgin subfamily a, 6 
LOC728065             0.007   PREDICTED: hypothetical protein 
LOC728065             0.007   PREDICTED: hypothetical protein 
LOC728065             0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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