Guide to the Human Genome
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Name: LOC283999 Sequence: fasta or formatted (394aa) NCBI GI: 224465238
Description:

hypothetical protein LOC283999

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         44           2
 C cysteine            2.0          8           1
 D aspartate           2.5         10           1
 E glutamate           2.3          9           1
 F phenylalanine       1.0          4           1
 G glycine            14.0         55           4
 H histidine           2.8         11           1
 I isoleucine          1.0          4           1
 K lysine              0.5          2           1
 L leucine            10.7         42           2
 M methionine          0.5          2           1
 N asparagine          0.5          2           1
 P proline            14.0         55           3
 Q glutamine           5.6         22           1
 R arginine           15.7         62           3
 S serine              7.4         29           3
 T threonine           2.0          8           1
 V valine              3.3         13           2
 W tryptophan          3.0         12           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC283999 
LOC100132234          0.036   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.036   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.036   PREDICTED: hypothetical protein LOC100132234 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
SAMD1                 0.032   sterile alpha motif domain containing 1 
LOC100128398          0.031   PREDICTED: hypothetical protein 
LOC100128398          0.031   PREDICTED: hypothetical protein 
LOC100128398          0.031   PREDICTED: hypothetical protein 
ARTN                  0.028   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.028   neurotrophic factor artemin isoform 1 precursor [Ho...
EMID1                 0.028   EMI domain containing 1 
C1orf127              0.027   hypothetical protein LOC148345 
LOC100292088          0.027   PREDICTED: hypothetical protein XP_002346321 
LOC645602             0.027   PREDICTED: hypothetical protein 
LOC645602             0.027   PREDICTED: hypothetical protein 
LOC645602             0.027   PREDICTED: hypothetical protein 
SYN1                  0.027   synapsin I isoform Ib 
FLJ37078              0.027   hypothetical protein LOC222183 
LOC100293254          0.026   PREDICTED: hypothetical protein 
LOC645321             0.026   PREDICTED: hypothetical protein 
LOC100289377          0.026   PREDICTED: hypothetical protein 
LOC645321             0.026   PREDICTED: hypothetical protein 
LOC100289377          0.026   PREDICTED: hypothetical protein XP_002343119 
LOC100289782          0.026   PREDICTED: hypothetical protein XP_002347588 
ARTN                  0.026   neurotrophic factor artemin isoform 2 
ARTN                  0.026   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.026   neurotrophic factor artemin isoform 3 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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