Guide to the Human Genome
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Name: GDF7 Sequence: fasta or formatted (450aa) NCBI GI: 61835232
Description:

growth differentiation factor 7 preproprotein

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.9         76           4
 C cysteine            2.4         11           2
 D aspartate           4.2         19           2
 E glutamate           4.4         20           2
 F phenylalanine       2.4         11           1
 G glycine            11.8         53          10
 H histidine           2.0          9           2
 I isoleucine          2.2         10           2
 K lysine              0.9          4           1
 L leucine             9.6         43           4
 M methionine          1.3          6           2
 N asparagine          1.3          6           2
 P proline             7.3         33           2
 Q glutamine           2.2         10           1
 R arginine           11.3         51           5
 S serine              7.6         34           2
 T threonine           3.6         16           1
 V valine              5.6         25           2
 W tryptophan          1.3          6           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth differentiation factor 7 preproprotein 
GDF6                  0.327   growth differentiation factor 6 precursor 
GDF5                  0.291   growth differentiation factor 5 preproprotein 
BMP4                  0.142   bone morphogenetic protein 4 preproprotein 
BMP4                  0.142   bone morphogenetic protein 4 preproprotein 
BMP4                  0.142   bone morphogenetic protein 4 preproprotein 
BMP2                  0.142   bone morphogenetic protein 2 preproprotein 
BMP8B                 0.134   bone morphogenetic protein 8B preproprotein 
BMP8A                 0.128   bone morphogenetic protein 8A 
BMP7                  0.123   bone morphogenetic protein 7 precursor 
BMP5                  0.123   bone morphogenetic protein 5 preproprotein 
BMP6                  0.118   bone morphogenetic protein 6 preproprotein 
BMP10                 0.118   bone morphogenetic protein 10 preproprotein 
GDF1                  0.108   growth differentiation factor 1 
GDF2                  0.102   growth differentiation factor 2 
BMP3                  0.100   bone morphogenetic protein 3 preproprotein 
BMP15                 0.099   bone morphogenetic protein 15 precursor 
GDF10                 0.093   growth differentiation factor 10 precursor 
NODAL                 0.092   nodal precursor 
GDF3                  0.091   growth differentiation factor 3 precursor 
INHBE                 0.081   activin beta E 
INHBA                 0.076   inhibin beta A precursor 
INHBC                 0.073   inhibin beta C chain preproprotein 
MSTN                  0.070   myostatin 
GDF11                 0.069   growth differentiation factor 11 precursor 
GDF9                  0.067   growth differentiation factor 9 precursor 
INHBB                 0.061   inhibin beta B subunit preproprotein 
GDF15                 0.057   growth differentiation factor 15 
LOC100292463          0.057   PREDICTED: similar to growth differentiation factor...
TGFB2                 0.055   transforming growth factor, beta 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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