Guide to the Human Genome
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Name: CLIC6 Sequence: fasta or formatted (686aa) NCBI GI: 27894378
Description:

chloride intracellular channel 6

Referenced in:

Chloride Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         95           3
 C cysteine            0.4          3           1
 D aspartate           7.4         51           1
 E glutamate          14.9        102           3
 F phenylalanine       2.0         14           1
 G glycine            13.7         94           4
 H histidine           1.2          8           1
 I isoleucine          2.3         16           2
 K lysine              3.5         24           2
 L leucine             4.5         31           2
 M methionine          0.9          6           1
 N asparagine          2.9         20           2
 P proline             8.6         59           2
 Q glutamine           2.9         20           2
 R arginine            5.4         37           2
 S serine              6.0         41           2
 T threonine           2.5         17           2
 V valine              5.4         37           1
 W tryptophan          0.4          3           1
 Y tyrosine            1.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chloride intracellular channel 6 
CLIC4                 0.263   chloride intracellular channel 4 
CLIC5                 0.254   chloride intracellular channel 5 isoform b 
CLIC5                 0.254   chloride intracellular channel 5 isoform a 
CLIC2                 0.225   chloride intracellular channel 2 
CLIC1                 0.212   chloride intracellular channel 1 
CLIC3                 0.148   chloride intracellular channel 3 
RPGR                  0.071   retinitis pigmentosa GTPase regulator isoform C [Hom...
RP1L1                 0.064   retinitis pigmentosa 1-like 1 
COL2A1                0.055   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.055   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A1                0.054   alpha 1 type I collagen preproprotein 
COL1A2                0.052   alpha 2 type I collagen 
COL7A1                0.049   alpha 1 type VII collagen precursor 
COL11A2               0.047   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.047   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.047   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL3A1                0.047   collagen type III alpha 1 preproprotein 
LOC100293055          0.046   PREDICTED: similar to COL22A1 protein 
COL5A3                0.046   collagen, type V, alpha 3 preproprotein 
COL5A1                0.043   alpha 1 type V collagen preproprotein 
COL5A2                0.042   alpha 2 type V collagen preproprotein 
COL28A1               0.042   collagen, type XXVIII precursor 
COL9A2                0.041   alpha 2 type IX collagen 
COL13A1               0.041   alpha 1 type XIII collagen isoform 11 
COL13A1               0.041   alpha 1 type XIII collagen isoform 8 
COL23A1               0.041   collagen, type XXIII, alpha 1 
COL9A3                0.040   alpha 3 type IX collagen 
COL11A1               0.039   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.039   alpha 1 type XI collagen isoform C preproprotein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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