Guide to the Human Genome
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Name: NOVA2 Sequence: fasta or formatted (492aa) NCBI GI: 5902724
Description:

neuro-oncological ventral antigen 2

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.3         90           6
 C cysteine            0.6          3           1
 D aspartate           1.2          6           1
 E glutamate           5.9         29           2
 F phenylalanine       1.6          8           1
 G glycine            12.2         60           5
 H histidine           0.4          2           1
 I isoleucine          4.3         21           2
 K lysine              4.9         24           2
 L leucine             8.3         41           2
 M methionine          0.8          4           1
 N asparagine          4.1         20           1
 P proline             7.5         37           7
 Q glutamine           4.7         23           1
 R arginine            2.6         13           2
 S serine              6.9         34           3
 T threonine           5.7         28           2
 V valine              7.3         36           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuro-oncological ventral antigen 2 
NOVA1                 0.711   neuro-oncological ventral antigen 1 isoform 2 
NOVA1                 0.697   neuro-oncological ventral antigen 1 isoform 1 
NOVA1                 0.212   neuro-oncological ventral antigen 1 isoform 3 
PCBP3                 0.075   poly(rC) binding protein 3 isoform 1 
PCBP4                 0.060   poly(rC) binding protein 4 isoform c 
PCBP4                 0.060   poly(rC) binding protein 4 isoform c 
PCBP3                 0.058   poly(rC) binding protein 3 isoform 2 
PCBP2                 0.057   poly(rC) binding protein 2 isoform b 
IGF2BP2               0.056   insulin-like growth factor 2 mRNA binding protein 2 ...
PCBP2                 0.056   poly(rC) binding protein 2 isoform g 
PCBP2                 0.056   poly(rC) binding protein 2 isoform e 
PCBP2                 0.056   poly(rC) binding protein 2 isoform c 
PCBP1                 0.054   poly(rC) binding protein 1 
PCBP2                 0.054   poly(rC) binding protein 2 isoform f 
PCBP2                 0.054   poly(rC) binding protein 2 isoform d 
PCBP2                 0.054   poly(rC) binding protein 2 isoform a 
FUBP1                 0.053   far upstream element-binding protein 
EVX2                  0.050   even-skipped homeobox 2 
TDRKH                 0.050   tudor and KH domain containing isoform a 
TDRKH                 0.050   tudor and KH domain containing isoform a 
TDRKH                 0.050   tudor and KH domain containing isoform a 
HNRNPK                0.049   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.049   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.049   heterogeneous nuclear ribonucleoprotein K isoform a ...
FUBP3                 0.048   far upstream element (FUSE) binding protein 3 [Homo...
IGF2BP2               0.048   insulin-like growth factor 2 mRNA binding protein 2 ...
KHSRP                 0.044   KH-type splicing regulatory protein 
IGF2BP3               0.040   insulin-like growth factor 2 mRNA binding protein 3 ...
MAF                   0.039   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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