Guide to the Human Genome
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Name: LOC285556 Sequence: fasta or formatted (1826aa) NCBI GI: 169167062
Description:

PREDICTED: hypothetical protein LOC285556

Not currently referenced in the text

Other entries for this name:
alt prot {1826aa} PREDICTED: hypothetical protein LOC285556
alt prot {1826aa} PREDICTED: hypothetical protein LOC285556
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9        181           6
 C cysteine            1.0         19           2
 D aspartate           3.8         69           3
 E glutamate           6.6        120           3
 F phenylalanine       2.4         43           1
 G glycine             8.3        151           6
 H histidine           1.7         31           2
 I isoleucine          2.8         52           2
 K lysine              5.9        108           2
 L leucine             7.0        127           2
 M methionine          1.6         30           3
 N asparagine          2.8         51           2
 P proline             8.6        157           3
 Q glutamine           5.3         97           3
 R arginine            6.0        110           2
 S serine             12.9        236           7
 T threonine           6.2        113           2
 V valine              5.2         95           3
 W tryptophan          0.5         10           1
 Y tyrosine            1.4         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.999   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.999   PREDICTED: hypothetical protein LOC285556 
LOC389333             0.016   hypothetical protein LOC389333 
C10orf71              0.013   hypothetical protein LOC118461 isoform 1 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
MUC2                  0.011   mucin 2 precursor 
PRG4                  0.010   proteoglycan 4 isoform D 
PRG4                  0.010   proteoglycan 4 isoform C 
PRG4                  0.010   proteoglycan 4 isoform B 
PRG4                  0.010   proteoglycan 4 isoform A 
FLJ22184              0.010   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.010   nascent polypeptide-associated complex alpha subuni...
RERE                  0.009   atrophin-1 like protein isoform a 
RERE                  0.009   atrophin-1 like protein isoform a 
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
RERE                  0.009   atrophin-1 like protein isoform b 
TNRC18                0.009   trinucleotide repeat containing 18 
POLR2A                0.009   DNA-directed RNA polymerase II A 
KIAA1522              0.008   hypothetical protein LOC57648 
KIAA0754              0.008   hypothetical protein LOC643314 
LOC729792             0.008   PREDICTED: hypothetical protein 
LOC100294136          0.008   PREDICTED: hypothetical protein 
LOC100294091          0.008   PREDICTED: hypothetical protein 
LOC100294238          0.008   PREDICTED: hypothetical protein 
LOC100294204          0.008   PREDICTED: hypothetical protein 
LOC729792             0.008   PREDICTED: hypothetical protein 
LOC729792             0.008   PREDICTED: hypothetical protein 
LOC100294501          0.008   PREDICTED: hypothetical protein 
LOC730401             0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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