Guide to the Human Genome
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Name: LOC100286986 Sequence: fasta or formatted (459aa) NCBI GI: 239746003
Description:

PREDICTED: hypothetical protein XP_002344191

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         56           4
 C cysteine            1.5          7           1
 D aspartate           2.6         12           2
 E glutamate           3.7         17           1
 F phenylalanine       2.6         12           1
 G glycine            11.1         51           5
 H histidine           1.7          8           1
 I isoleucine          1.7          8           1
 K lysine              1.5          7           1
 L leucine             7.4         34           2
 M methionine          1.3          6           1
 N asparagine          1.5          7           1
 P proline            14.2         65           3
 Q glutamine           4.4         20           2
 R arginine           12.9         59           3
 S serine              9.2         42           2
 T threonine           4.8         22           1
 V valine              4.6         21           2
 W tryptophan          0.9          4           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344191 
LOC100292122          0.893   PREDICTED: hypothetical protein XP_002345138 
LOC100290733          0.072   PREDICTED: hypothetical protein XP_002347876 
NACA                  0.041   nascent polypeptide-associated complex alpha subuni...
TAF4                  0.041   TBP-associated factor 4 
SCARF2                0.039   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.039   scavenger receptor class F, member 2 isoform 2 [Homo...
LOC643355             0.037   PREDICTED: hypothetical protein 
LOC643355             0.036   PREDICTED: hypothetical protein 
LOC643355             0.036   PREDICTED: hypothetical protein 
KRTAP4-6              0.035   PREDICTED: keratin associated protein 4.6 
FLJ22184              0.035   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
GRIN2D                0.033   N-methyl-D-aspartate receptor subunit 2D precursor ...
SYNPO                 0.032   synaptopodin isoform A 
LOC100127891          0.031   PREDICTED: hypothetical protein 
FLJ20021              0.031   PREDICTED: hypothetical protein 
FLJ20021              0.031   PREDICTED: hypothetical protein 
FLJ20021              0.031   PREDICTED: hypothetical protein 
MLXIPL                0.030   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.030   Williams Beuren syndrome chromosome region 14 isofor...
MICALL2               0.030   MICAL-like 2 isoform 1 
SRRM2                 0.030   splicing coactivator subunit SRm300 
ARHGAP17              0.030   nadrin isoform 1 
WIPF3                 0.030   WAS/WASL interacting protein family, member 3 [Homo...
DCAF10                0.030   WD repeat domain 32 
DACT3                 0.028   thymus expressed gene 3-like 
EFS                   0.027   embryonal Fyn-associated substrate isoform 2 
EFS                   0.027   embryonal Fyn-associated substrate isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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