Guide to the Human Genome
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Name: LOC100287455 Sequence: fasta or formatted (355aa) NCBI GI: 239742692
Description:

PREDICTED: hypothetical protein XP_002342583

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         47           6
 C cysteine            2.3          8           2
 D aspartate           1.1          4           1
 E glutamate           2.3          8           1
 F phenylalanine       1.4          5           1
 G glycine            11.0         39           3
 H histidine           3.4         12           2
 I isoleucine          0.6          2           1
 K lysine              1.7          6           2
 L leucine             7.0         25           1
 M methionine          0.3          1           1
 N asparagine          1.7          6           1
 P proline            16.6         59           2
 Q glutamine           2.8         10           1
 R arginine           13.5         48           3
 S serine             11.8         42           3
 T threonine           5.6         20           2
 V valine              1.4          5           1
 W tryptophan          0.8          3           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342583 
LOC100291624          1.000   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          1.000   PREDICTED: hypothetical protein XP_002346761 
LOC643355             0.054   PREDICTED: hypothetical protein 
SRRM2                 0.051   splicing coactivator subunit SRm300 
FLJ37078              0.049   hypothetical protein LOC222183 
LOC643355             0.047   PREDICTED: hypothetical protein 
LOC643355             0.047   PREDICTED: hypothetical protein 
NACA                  0.045   nascent polypeptide-associated complex alpha subuni...
SFRS16                0.043   splicing factor, arginine/serine-rich 16 
SRRM1                 0.042   serine/arginine repetitive matrix 1 
WIPF1                 0.040   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.040   WAS/WASL interacting protein family, member 1 
ZIC5                  0.040   zinc finger protein of the cerebellum 5 
BAT2                  0.039   HLA-B associated transcript-2 
LOC100290274          0.038   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.038   PREDICTED: hypothetical protein XP_002342846 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
LOC729417             0.038   PREDICTED: hypothetical protein 
MUPCDH                0.038   mucin and cadherin-like isoform 1 
LOC729417             0.038   PREDICTED: hypothetical protein 
LOC729417             0.038   PREDICTED: hypothetical protein 
TAF4                  0.038   TBP-associated factor 4 
COL1A1                0.036   alpha 1 type I collagen preproprotein 
HCN4                  0.035   hyperpolarization activated cyclic nucleotide-gated p...
FLJ22184              0.035   PREDICTED: hypothetical protein LOC80164 
LOC100287514          0.035   PREDICTED: hypothetical protein XP_002343754 
MARK2                 0.033   MAP/microtubule affinity-regulating kinase 2 isoform...
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
CACNA1I               0.033   calcium channel, voltage-dependent, T type, alpha 1I...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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