Guide to the Human Genome
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Name: CABP2 Sequence: fasta or formatted (163aa) NCBI GI: 110611180
Description:

calcium binding protein 2 isoform 2

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [220aa] calcium binding protein 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5          9           2
 C cysteine            1.8          3           1
 D aspartate           9.2         15           1
 E glutamate          12.9         21           2
 F phenylalanine       4.9          8           1
 G glycine             9.8         16           2
 H histidine           0.0          0           0
 I isoleucine          4.9          8           1
 K lysine              3.1          5           1
 L leucine            10.4         17           2
 M methionine          4.9          8           2
 N asparagine          1.8          3           1
 P proline             3.1          5           1
 Q glutamine           3.7          6           2
 R arginine           11.0         18           2
 S serine              3.1          5           1
 T threonine           2.5          4           1
 V valine              5.5          9           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium binding protein 2 isoform 2 
CABP2                 0.891   calcium binding protein 2 isoform 1 
CABP1                 0.746   calcium binding protein 1 isoform 2 
CABP1                 0.710   calcium binding protein 1 isoform 3 
CABP1                 0.706   calcium binding protein 1 isoform 1 
CABP4                 0.627   calcium binding protein 4 
CABP5                 0.614   calcium binding protein 5 
CALM3                 0.307   calmodulin 3 
CALM2                 0.307   calmodulin 2 
CALM1                 0.307   calmodulin 1 
CALML3                0.300   calmodulin-like 3 
TNNC2                 0.244   fast skeletal muscle troponin C 
CALML5                0.234   calmodulin-like 5 
TNNC1                 0.218   troponin C, slow 
CETN2                 0.205   caltractin 
CETN1                 0.201   centrin 1 
CETN3                 0.195   centrin 3 
CALN1                 0.191   calneuron 1 isoform 2 
CALN1                 0.191   calneuron 1 isoform 1 
CABP7                 0.188   calcium binding protein 7 
MYL6B                 0.168   smooth muscle and non-muscle myosin alkali light chai...
CALML6                0.162   calmodulin-like 6 
MYL1                  0.152   fast skeletal myosin alkali light chain 1 isoform 1f...
MYL1                  0.149   fast skeletal myosin alkali light chain 1 isoform 3f...
MYL6                  0.149   myosin, light chain 6, alkali, smooth muscle and non...
PPP3R1                0.145   protein phosphatase 3, regulatory subunit B, alpha is...
MYL3                  0.142   slow skeletal ventricular myosin alkali light chain 3...
MYL6                  0.142   myosin, light chain 6, alkali, smooth muscle and non...
MYL9                  0.139   myosin regulatory light chain 9 isoform a 
MYL12A                0.139   myosin, light chain 12A, regulatory, non-sarcomeric [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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