Guide to the Human Genome
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Name: CABP2 Sequence: fasta or formatted (220aa) NCBI GI: 110611178
Description:

calcium binding protein 2 isoform 1

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [163aa] calcium binding protein 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         13           2
 C cysteine            2.3          5           1
 D aspartate           7.7         17           1
 E glutamate          10.0         22           2
 F phenylalanine       4.1          9           1
 G glycine            10.0         22           2
 H histidine           0.0          0           0
 I isoleucine          4.5         10           1
 K lysine              2.7          6           1
 L leucine            10.5         23           2
 M methionine          3.6          8           2
 N asparagine          1.8          4           1
 P proline             6.8         15           2
 Q glutamine           4.5         10           2
 R arginine            9.1         20           2
 S serine              6.4         14           3
 T threonine           2.3          5           1
 V valine              5.5         12           1
 W tryptophan          0.9          2           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium binding protein 2 isoform 1 
CABP2                 0.641   calcium binding protein 2 isoform 2 
CABP1                 0.565   calcium binding protein 1 isoform 1 
CABP1                 0.525   calcium binding protein 1 isoform 3 
CABP1                 0.508   calcium binding protein 1 isoform 2 
CABP5                 0.489   calcium binding protein 5 
CABP4                 0.449   calcium binding protein 4 
CALM3                 0.221   calmodulin 3 
CALM2                 0.221   calmodulin 2 
CALM1                 0.221   calmodulin 1 
CALML3                0.216   calmodulin-like 3 
TNNC2                 0.176   fast skeletal muscle troponin C 
CALML5                0.169   calmodulin-like 5 
TNNC1                 0.157   troponin C, slow 
CETN1                 0.152   centrin 1 
CABP7                 0.147   calcium binding protein 7 
CETN2                 0.145   caltractin 
CETN3                 0.138   centrin 3 
CALN1                 0.135   calneuron 1 isoform 2 
CALN1                 0.135   calneuron 1 isoform 1 
MYL6B                 0.124   smooth muscle and non-muscle myosin alkali light chai...
CALML6                0.121   calmodulin-like 6 
MYL1                  0.109   fast skeletal myosin alkali light chain 1 isoform 1f...
MYL1                  0.107   fast skeletal myosin alkali light chain 1 isoform 3f...
MYL6                  0.107   myosin, light chain 6, alkali, smooth muscle and non...
MYL3                  0.107   slow skeletal ventricular myosin alkali light chain 3...
PPP3R1                0.105   protein phosphatase 3, regulatory subunit B, alpha is...
MYL9                  0.105   myosin regulatory light chain 9 isoform a 
MYL12A                0.105   myosin, light chain 12A, regulatory, non-sarcomeric [...
MYL6                  0.102   myosin, light chain 6, alkali, smooth muscle and non...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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