Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CETN3 Sequence: fasta or formatted (167aa) NCBI GI: 46397403
Description:

centrin 3

Referenced in:

Centrosome

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         11           1
 C cysteine            0.0          0           0
 D aspartate          13.2         22           4
 E glutamate          13.8         23           2
 F phenylalanine       5.4          9           1
 G glycine             4.2          7           1
 H histidine           1.2          2           1
 I isoleucine          7.2         12           1
 K lysine             10.2         17           2
 L leucine             9.6         16           1
 M methionine          3.0          5           1
 N asparagine          2.4          4           1
 P proline             0.6          1           1
 Q glutamine           1.8          3           1
 R arginine            7.2         12           2
 S serine              3.6          6           1
 T threonine           3.6          6           1
 V valine              4.8          8           2
 W tryptophan          0.6          1           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centrin 3 
CETN1                 0.528   centrin 1 
CETN2                 0.521   caltractin 
CALM3                 0.307   calmodulin 3 
CALM2                 0.307   calmodulin 2 
CALM1                 0.307   calmodulin 1 
CALML3                0.300   calmodulin-like 3 
CALML5                0.228   calmodulin-like 5 
CABP4                 0.221   calcium binding protein 4 
TNNC2                 0.218   fast skeletal muscle troponin C 
CALML6                0.205   calmodulin-like 6 
CABP2                 0.195   calcium binding protein 2 isoform 2 
CABP5                 0.191   calcium binding protein 5 
CABP2                 0.191   calcium binding protein 2 isoform 1 
CABP1                 0.188   calcium binding protein 1 isoform 2 
CABP1                 0.188   calcium binding protein 1 isoform 1 
CABP1                 0.182   calcium binding protein 1 isoform 3 
MYL6B                 0.175   smooth muscle and non-muscle myosin alkali light chai...
TNNC1                 0.175   troponin C, slow 
CALML4                0.168   calmodulin-like 4 isoform 1 
MYL1                  0.162   fast skeletal myosin alkali light chain 1 isoform 1f...
EFCAB2                0.158   EF-hand calcium binding domain 2 isoform a 
MYL2                  0.155   slow cardiac myosin regulatory light chain 2 
MYL6                  0.152   myosin, light chain 6, alkali, smooth muscle and non...
MYL6                  0.149   myosin, light chain 6, alkali, smooth muscle and non...
MYL9                  0.145   myosin regulatory light chain 9 isoform a 
MYL1                  0.145   fast skeletal myosin alkali light chain 1 isoform 3f...
MYL12A                0.142   myosin, light chain 12A, regulatory, non-sarcomeric [...
MYL5                  0.139   myosin regulatory light chain 5 
MYL12B                0.132   myosin regulatory light chain MRCL2 isoform A [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press