Guide to the Human Genome
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Name: CABP1 Sequence: fasta or formatted (167aa) NCBI GI: 13929434
Description:

calcium binding protein 1 isoform 2

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [227aa] calcium binding protein 1 isoform 1
alt prot [370aa] calcium binding protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          5           1
 C cysteine            1.8          3           1
 D aspartate          10.2         17           2
 E glutamate          12.0         20           2
 F phenylalanine       4.8          8           1
 G glycine             8.4         14           2
 H histidine           1.8          3           1
 I isoleucine          5.4          9           2
 K lysine              4.2          7           1
 L leucine             9.6         16           2
 M methionine          6.6         11           2
 N asparagine          4.8          8           1
 P proline             2.4          4           1
 Q glutamine           1.8          3           2
 R arginine           10.2         17           1
 S serine              3.6          6           1
 T threonine           3.0          5           1
 V valine              4.8          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium binding protein 1 isoform 2 
CABP1                 0.902   calcium binding protein 1 isoform 3 
CABP1                 0.902   calcium binding protein 1 isoform 1 
CABP2                 0.717   calcium binding protein 2 isoform 2 
CABP2                 0.679   calcium binding protein 2 isoform 1 
CABP5                 0.667   calcium binding protein 5 
CABP4                 0.575   calcium binding protein 4 
CALM3                 0.311   calmodulin 3 
CALM2                 0.311   calmodulin 2 
CALM1                 0.311   calmodulin 1 
CALML3                0.305   calmodulin-like 3 
TNNC2                 0.244   fast skeletal muscle troponin C 
CALML5                0.225   calmodulin-like 5 
TNNC1                 0.219   troponin C, slow 
CALN1                 0.206   calneuron 1 isoform 2 
CALN1                 0.206   calneuron 1 isoform 1 
CABP7                 0.197   calcium binding protein 7 
CETN1                 0.194   centrin 1 
CETN2                 0.187   caltractin 
CETN3                 0.181   centrin 3 
CALML6                0.162   calmodulin-like 6 
CALML4                0.149   calmodulin-like 4 isoform 1 
PPP3R1                0.137   protein phosphatase 3, regulatory subunit B, alpha is...
MYL12B                0.130   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.130   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.130   myosin regulatory light chain MRCL2 isoform A 
MYL9                  0.130   myosin regulatory light chain 9 isoform a 
MYL12A                0.130   myosin, light chain 12A, regulatory, non-sarcomeric [...
LOC100292202          0.127   PREDICTED: similar to solute carrier family 25, mem...
SLC25A25              0.127   solute carrier family 25, member 25 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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