Guide to the Human Genome
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Name: CALML6 Sequence: fasta or formatted (181aa) NCBI GI: 50897266
Description:

calmodulin-like 6

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         12           2
 C cysteine            1.7          3           1
 D aspartate           6.6         12           1
 E glutamate          13.3         24           2
 F phenylalanine       5.0          9           2
 G glycine             7.7         14           1
 H histidine           1.7          3           2
 I isoleucine          3.3          6           1
 K lysine              7.2         13           1
 L leucine             8.3         15           2
 M methionine          6.1         11           2
 N asparagine          4.4          8           1
 P proline             2.2          4           1
 Q glutamine           5.0          9           2
 R arginine            2.8          5           1
 S serine              4.4          8           1
 T threonine           5.0          9           3
 V valine              4.4          8           1
 W tryptophan          1.7          3           1
 Y tyrosine            2.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calmodulin-like 6 
CALM3                 0.314   calmodulin 3 
CALM2                 0.314   calmodulin 2 
CALM1                 0.314   calmodulin 1 
CALML3                0.288   calmodulin-like 3 
TNNC2                 0.254   fast skeletal muscle troponin C 
TNNC1                 0.231   troponin C, slow 
CETN1                 0.207   centrin 1 
CETN2                 0.199   caltractin 
CALML5                0.187   calmodulin-like 5 
CETN3                 0.179   centrin 3 
CALML4                0.161   calmodulin-like 4 isoform 1 
CABP1                 0.153   calcium binding protein 1 isoform 3 
CABP1                 0.147   calcium binding protein 1 isoform 2 
CABP1                 0.147   calcium binding protein 1 isoform 1 
CABP2                 0.147   calcium binding protein 2 isoform 1 
CABP4                 0.144   calcium binding protein 4 
CABP2                 0.141   calcium binding protein 2 isoform 2 
CABP5                 0.141   calcium binding protein 5 
MYL1                  0.135   fast skeletal myosin alkali light chain 1 isoform 3f...
MYL6                  0.133   myosin, light chain 6, alkali, smooth muscle and non...
MYL6B                 0.130   smooth muscle and non-muscle myosin alkali light chai...
EFCAB2                0.130   EF-hand calcium binding domain 2 isoform a 
MYL6                  0.127   myosin, light chain 6, alkali, smooth muscle and non...
MYL1                  0.127   fast skeletal myosin alkali light chain 1 isoform 1f...
MYL4                  0.127   atrial/embryonic alkali myosin light chain 
MYL4                  0.127   atrial/embryonic alkali myosin light chain 
MYL9                  0.124   myosin regulatory light chain 9 isoform a 
MYL12B                0.115   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.115   myosin regulatory light chain MRCL2 isoform A [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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