Guide to the Human Genome
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Name: CETN1 Sequence: fasta or formatted (172aa) NCBI GI: 4757974
Description:

centrin 1

Referenced in:

Centrosome

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         12           2
 C cysteine            0.0          0           0
 D aspartate           9.3         16           3
 E glutamate          14.0         24           3
 F phenylalanine       5.8         10           1
 G glycine             6.4         11           1
 H histidine           0.0          0           0
 I isoleucine          4.1          7           1
 K lysine             12.2         21           2
 L leucine             7.6         13           1
 M methionine          4.7          8           1
 N asparagine          2.9          5           1
 P proline             2.3          4           1
 Q glutamine           2.9          5           1
 R arginine            5.2          9           1
 S serine              5.2          9           1
 T threonine           5.2          9           1
 V valine              4.7          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centrin 1 
CETN2                 0.865   caltractin 
CETN3                 0.513   centrin 3 
CALM3                 0.417   calmodulin 3 
CALM2                 0.417   calmodulin 2 
CALM1                 0.417   calmodulin 1 
CALML3                0.401   calmodulin-like 3 
TNNC2                 0.304   fast skeletal muscle troponin C 
CALML5                0.285   calmodulin-like 5 
TNNC1                 0.285   troponin C, slow 
CALML4                0.240   calmodulin-like 4 isoform 1 
CALML6                0.231   calmodulin-like 6 
CABP5                 0.218   calcium binding protein 5 
CABP2                 0.205   calcium binding protein 2 isoform 1 
MYL9                  0.202   myosin regulatory light chain 9 isoform a 
CABP1                 0.199   calcium binding protein 1 isoform 3 
CABP1                 0.199   calcium binding protein 1 isoform 1 
MYL12A                0.199   myosin, light chain 12A, regulatory, non-sarcomeric [...
CABP4                 0.196   calcium binding protein 4 
CABP1                 0.196   calcium binding protein 1 isoform 2 
CABP2                 0.196   calcium binding protein 2 isoform 2 
MYL12B                0.189   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.189   myosin regulatory light chain MRCL2 isoform B [Homo...
MYL12B                0.189   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.189   myosin regulatory light chain MRCL2 isoform A 
MYL6B                 0.179   smooth muscle and non-muscle myosin alkali light chai...
EFCAB2                0.176   EF-hand calcium binding domain 2 isoform a 
MYL6                  0.173   myosin, light chain 6, alkali, smooth muscle and non...
MYL6                  0.170   myosin, light chain 6, alkali, smooth muscle and non...
MYL1                  0.170   fast skeletal myosin alkali light chain 1 isoform 1f...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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