Guide to the Human Genome
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Name: PPP3R1 Sequence: fasta or formatted (170aa) NCBI GI: 4506025
Description:

protein phosphatase 3, regulatory subunit B, alpha isoform 1

Referenced in:

Calmodulin and Calcium
Serine / Threonine Protein Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9          5           1
 C cysteine            1.2          2           1
 D aspartate          11.2         19           1
 E glutamate           7.6         13           2
 F phenylalanine       7.1         12           1
 G glycine             8.2         14           2
 H histidine           1.2          2           1
 I isoleucine          6.5         11           2
 K lysine              8.8         15           2
 L leucine             8.2         14           1
 M methionine          4.1          7           2
 N asparagine          4.7          8           2
 P proline             1.8          3           1
 Q glutamine           5.3          9           2
 R arginine            3.5          6           1
 S serine              5.9         10           1
 T threonine           1.8          3           1
 V valine              8.2         14           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 3, regulatory subunit B, alpha is... 
PPP3R2                0.832   protein phosphatase 3 regulatory subunit B, beta iso...
CHP                   0.335   calcium binding protein P22 
CHP2                  0.278   hepatocellular carcinoma antigen gene 520 
CALM3                 0.199   calmodulin 3 
CALM2                 0.199   calmodulin 2 
CALM1                 0.199   calmodulin 1 
CIB2                  0.196   DNA-dependent protein kinase catalytic subunit-intera...
CALML3                0.187   calmodulin-like 3 
CIB3                  0.180   DNA-dependent protein kinase catalytic subunit-inter...
HPCAL1                0.168   hippocalcin-like 1 
HPCAL1                0.168   hippocalcin-like 1 
HPCAL4                0.165   hippocalcin-like protein 4 
NCALD                 0.161   neurocalcin delta 
NCALD                 0.161   neurocalcin delta 
NCALD                 0.161   neurocalcin delta 
NCALD                 0.161   neurocalcin delta 
NCALD                 0.161   neurocalcin delta 
NCALD                 0.161   neurocalcin delta 
NCALD                 0.161   neurocalcin delta 
NCALD                 0.161   neurocalcin delta 
TNNC2                 0.161   fast skeletal muscle troponin C 
VSNL1                 0.158   visinin-like 1 
CIB1                  0.158   calcium and integrin binding 1 
KCNIP4                0.155   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.155   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.155   Kv channel interacting protein 4 isoform 4 
KCNIP4                0.155   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.155   Kv channel interacting protein 4 isoform 2 
KCNIP4                0.155   Kv channel interacting protein 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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