Guide to the Human Genome
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Name: CABP5 Sequence: fasta or formatted (173aa) NCBI GI: 11067753
Description:

calcium binding protein 5

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          8           1
 C cysteine            1.2          2           1
 D aspartate           8.1         14           2
 E glutamate          12.7         22           2
 F phenylalanine       6.4         11           1
 G glycine             9.2         16           2
 H histidine           0.0          0           0
 I isoleucine          5.2          9           1
 K lysine              4.0          7           1
 L leucine             9.8         17           2
 M methionine          7.5         13           2
 N asparagine          2.3          4           1
 P proline             3.5          6           1
 Q glutamine           5.2          9           2
 R arginine            8.1         14           1
 S serine              1.7          3           1
 T threonine           4.6          8           1
 V valine              5.2          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium binding protein 5 
CABP1                 0.725   calcium binding protein 1 isoform 1 
CABP1                 0.656   calcium binding protein 1 isoform 2 
CABP1                 0.653   calcium binding protein 1 isoform 3 
CABP2                 0.644   calcium binding protein 2 isoform 1 
CABP2                 0.581   calcium binding protein 2 isoform 2 
CABP4                 0.528   calcium binding protein 4 
CALM3                 0.309   calmodulin 3 
CALM2                 0.309   calmodulin 2 
CALM1                 0.309   calmodulin 1 
CALML3                0.287   calmodulin-like 3 
TNNC2                 0.237   fast skeletal muscle troponin C 
CETN1                 0.212   centrin 1 
TNNC1                 0.209   troponin C, slow 
CETN2                 0.206   caltractin 
CABP7                 0.206   calcium binding protein 7 
CALN1                 0.194   calneuron 1 isoform 2 
CALN1                 0.194   calneuron 1 isoform 1 
CALML5                0.194   calmodulin-like 5 
CETN3                 0.181   centrin 3 
CALML6                0.153   calmodulin-like 6 
MYL6B                 0.150   smooth muscle and non-muscle myosin alkali light chai...
CALML4                0.138   calmodulin-like 4 isoform 1 
MYL9                  0.131   myosin regulatory light chain 9 isoform a 
MYL12B                0.131   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.131   myosin regulatory light chain MRCL2 isoform B [Homo...
MYL12B                0.131   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.131   myosin regulatory light chain MRCL2 isoform A 
MYL12A                0.128   myosin, light chain 12A, regulatory, non-sarcomeric [...
MYL1                  0.122   fast skeletal myosin alkali light chain 1 isoform 3f...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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