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Search of human proteins with 158261990
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|158261990 CXXC finger 5 [Homo sapiens]
(322 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|158261990 CXXC finger 5 [Homo sapiens] 634 0.0
gi|13376816 CXXC finger 4 [Homo sapiens] 140 1e-33
gi|156139122 CXXC finger 6 [Homo sapiens] 87 3e-17
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 50 2e-06
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 47 3e-05
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 46 4e-05
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 44 1e-04
gi|13376611 zinc finger protein 703 [Homo sapiens] 44 2e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 44 2e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 44 2e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 44 2e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 44 2e-04
gi|157785645 SPEG complex locus [Homo sapiens] 43 3e-04
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 42 7e-04
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 42 7e-04
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 42 7e-04
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 42 7e-04
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 42 7e-04
gi|46519151 ankyrin repeat and KH domain containing 1 isoform 2 ... 41 0.001
gi|23510368 homeobox D11 [Homo sapiens] 41 0.002
gi|24497554 homeobox A13 [Homo sapiens] 41 0.002
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 40 0.003
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 40 0.003
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 40 0.003
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 40 0.003
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 40 0.004
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 40 0.004
gi|21071067 TBP-associated factor 5 [Homo sapiens] 40 0.004
gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo ... 40 0.004
gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Ho... 40 0.004
>gi|158261990 CXXC finger 5 [Homo sapiens]
Length = 322
Score = 634 bits (1636), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MSSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRN 60
MSSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRN
Sbjct: 1 MSSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRN 60
Query: 61 KSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHD 120
KSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHD
Sbjct: 61 KSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHD 120
Query: 121 LAAAMAVDKSNPTSKHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHL 180
LAAAMAVDKSNPTSKHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHL
Sbjct: 121 LAAAMAVDKSNPTSKHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHL 180
Query: 181 PLMSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGL 240
PLMSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGL
Sbjct: 181 PLMSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGL 240
Query: 241 AEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELK 300
AEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELK
Sbjct: 241 AEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELK 300
Query: 301 KKPSAALEKVMLPTGAAFRWFQ 322
KKPSAALEKVMLPTGAAFRWFQ
Sbjct: 301 KKPSAALEKVMLPTGAAFRWFQ 322
>gi|13376816 CXXC finger 4 [Homo sapiens]
Length = 198
Score = 140 bits (354), Expect = 1e-33
Identities = 78/173 (45%), Positives = 100/173 (57%), Gaps = 19/173 (10%)
Query: 168 STEMLKRVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFI 222
+T L + EH PL M++ G + E + E + S P LG + PG+ +
Sbjct: 25 NTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIV 84
Query: 223 MTP------AGVFLAESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAP 268
MT A + +SA +A LA+ P +S+ SSG KKKRKRCG+C P
Sbjct: 85 MTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVP 144
Query: 269 CRRRINCEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWF 321
C+R INC CSSCRNRKTGHQICKFRKCEELKKKP +LE+ +P+ AFRWF
Sbjct: 145 CKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWF 197
>gi|156139122 CXXC finger 6 [Homo sapiens]
Length = 2136
Score = 86.7 bits (213), Expect = 3e-17
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 18/117 (15%)
Query: 209 PYLGAFPINPGLFIMTPAGVFLAE---------SALHMAGLAEYPMQGELASAISSG--- 256
P G F + G+ ++ AG ++ S +H+ M + S SS
Sbjct: 519 PERGLFHASLGIAQLSQAGPSKSDRGSSQVSVTSTVHVVNTTVVTMPVPMVSTSSSSYTT 578
Query: 257 ------KKKRKRCGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELKKKPSAAL 307
KKKRKRCG+C PC+++ NC +C+ C+NRK HQICK RKCEELKKKPS +
Sbjct: 579 LLPTLEKKKRKRCGVCEPCQQKTNCGECTYCKNRKNSHQICKKRKCEELKKKPSVVV 635
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 50.4 bits (119), Expect = 2e-06
Identities = 54/180 (30%), Positives = 70/180 (38%), Gaps = 46/180 (25%)
Query: 5 GGGSQDAGGSSSSSTNGSGGSGSS----GPKAGAADKSAVVAAAA------------PAS 48
GGG GG SS G+GG SS GP+AG A +A A P S
Sbjct: 19 GGGG--GGGGSSGGGGGAGGGYSSACRPGPRAGGAAAAAACGGGAALGLLPPGKTQSPES 76
Query: 49 --------VADDTPPPERRNKSGIISEPLNKSL------RRSRPLSHYSSF--------- 85
VA+ P + I EP+ + + R R + YSSF
Sbjct: 77 LLDIAARRVAEKWPFQRVEERFERIPEPVQRRIVYWSFPRSEREICMYSSFNTGGGAAGG 136
Query: 86 -----GSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAAMAVDKSNPTSKHKSGA 140
G GG+GGG G S+ AT+AAA ++ A AAA A + S +GA
Sbjct: 137 PGDDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAAAAGAGAPSVGAAGA 196
Score = 31.6 bits (70), Expect = 0.99
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 2 SSLGGGSQDAGGSSSSS------TNGSGGSGSSGPKAGAADKSAVVAAAAPASVA 50
SS G AGG S G GG SS P A +A ++ AAAA A+ A
Sbjct: 125 SSFNTGGGAAGGPGDDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAA 179
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 46.6 bits (109), Expect = 3e-05
Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 5 GGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGI 64
GGG GG SS G GG G+SG G A+ + + VA G
Sbjct: 162 GGGGHGGGGGGGSSNAGGGGGGASG---GGANSKPAQKKSCGSKVAG--------GAGGG 210
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAA 124
+S+P K + +GG GGG +A A A AA+LL G
Sbjct: 211 VSKPHAKLI-------------LAGGGGGGKAAAAAAASFAAEQAGAAALLPLG------ 251
Query: 125 MAVDKSNPTSKHKSGAVASLLSKAERATELAAEGQ 159
A D + A AS S A + LAA G+
Sbjct: 252 AAADHHSLYKARTPSASASASSAASASAALAAPGK 286
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 46.2 bits (108), Expect = 4e-05
Identities = 49/158 (31%), Positives = 66/158 (41%), Gaps = 18/158 (11%)
Query: 5 GGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKS-- 62
GGG GG SSSS+N S G G +G + GA S+VV A +PA VA + +
Sbjct: 398 GGGGGSGGGGSSSSSNSSAG-GGAGKQNGATSYSSVV-ADSPAEVALSSSGGNNASSQAL 455
Query: 63 GIISEPLNKSLRRSRPLSHYSSFGSSG-GSGGGSMMGGES-------------ADKATAA 108
G S P N S+ S + G+ G G G+ GG S + A
Sbjct: 456 GPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDA 515
Query: 109 AAAASLLANGHDLAAAMAVDKSNPTSKHKSGAVASLLS 146
AA +LL + A + P S KS A + +S
Sbjct: 516 KAAGALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAIS 553
Score = 36.6 bits (83), Expect = 0.031
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 26 GSSGPKAGAADKSAVVAAAAPA-SVADDTPPPERRNKSGIISEPLNKSLRRSRPLSHYSS 84
G++G A AA SA+ A+PA S TP P + + P S + RP S
Sbjct: 339 GNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAP--PAPSGPSTTQPRP----PS 392
Query: 85 FGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAAMAVDKSNPTSKHKSG 139
SGG GGGS GG S+ ++A A NG +++ D + SG
Sbjct: 393 VQPSGGGGGGSGGGGSSSSSNSSAGGGAG-KQNGATSYSSVVADSPAEVALSSSG 446
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 44.3 bits (103), Expect = 1e-04
Identities = 56/236 (23%), Positives = 90/236 (38%), Gaps = 38/236 (16%)
Query: 2 SSLGGGSQDAGGSSSSS-----------TNGSGGSGSSGPKAGAADKSAVVAAAAPASVA 50
SS GS + SSSSS NG GG G+ G AA AA+PAS
Sbjct: 2561 SSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASS----RAASPAS-- 2614
Query: 51 DDTPPPERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAA 110
+ S S + S S S SS SS S S S+ ++++++
Sbjct: 2615 ---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Query: 111 AASLLANGHDLAAAMAVDKSNPTSKHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTE 170
++S + + ++ + D++ P A A+L +KA + A + + + +
Sbjct: 2666 SSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQ 2725
Query: 171 MLKRVVQEHLPLMSEAGAG------------LPDMEAVAGAEALNGQSDFPYLGAF 214
Q PL +A AG LP + +A + L + P + AF
Sbjct: 2726 PQAPPPQPTQPLQPKAQAGAKSRPKKREGVHLPTTKELAKRQRLPSVENRPKIAAF 2781
Score = 32.7 bits (73), Expect = 0.44
Identities = 37/191 (19%), Positives = 69/191 (36%), Gaps = 21/191 (10%)
Query: 9 QDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPP---------PERR 59
+D G GS P AG+++ A A +A + P P+
Sbjct: 2485 EDPGAGGWQEPKSLLSLGSYPPAAGSSEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSP 2544
Query: 60 NKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADK------------ATA 107
+K+ + +S S S SS SS S G G E DK +A
Sbjct: 2545 DKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSA 2604
Query: 108 AAAAASLLANGHDLAAAMAVDKSNPTSKHKSGAVASLLSKAERATELAAEGQLTLQQFAQ 167
A++ A+ A+ +++ + S+ +S S + +S S + ++ ++ + +
Sbjct: 2605 ASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2664
Query: 168 STEMLKRVVQE 178
S+ E
Sbjct: 2665 SSSSSSSTTDE 2675
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 43.9 bits (102), Expect = 2e-04
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 15/130 (11%)
Query: 5 GGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAA----AAPASVADDTPPP---- 56
GG S+ GSSS S+ S S S G KAG SA AP S + + P
Sbjct: 163 GGDSRKDSGSSSVSSTSSSSSSSPGDKAGFRVPSAACPPFPPHGAPVSASSSSSSPGGSR 222
Query: 57 -------ERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAA 109
+ +N G+ L+K + +P ++ GG G+ G ES +
Sbjct: 223 GGSPHHSDCKNGGGVGGGELDKKDQEPKPSPEPAAVSRGGGGEPGAHGGAESGASGRKSE 282
Query: 110 AAASLLANGH 119
++L+ GH
Sbjct: 283 PPSALVGAGH 292
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 2 SSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNK 61
SS S + SSSSS++ S S S V A V TP P+ +
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVR 2591
Query: 62 SGIISEPL-NKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAAS 113
G EP K RRS S SS SS S S S+ ++++++++S
Sbjct: 2592 EGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2644
Score = 39.3 bits (90), Expect = 0.005
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 2 SSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPP-ERRN 60
SS S + SSSSS++ S S SS + + + A P + PPP ERR+
Sbjct: 2616 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRS 2675
Query: 61 KSGIISEPLNKSLRRSRPLSH 81
+S +P++ SLR SR LS+
Sbjct: 2676 RSP--RKPID-SLRDSRSLSY 2693
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 43.9 bits (102), Expect = 2e-04
Identities = 42/140 (30%), Positives = 50/140 (35%), Gaps = 27/140 (19%)
Query: 5 GGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGI 64
GGG GG S G GG G+ AG A AV AAAA A+ A S
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAG---AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSS- 304
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAA 124
+ Y S GGG MMG A+ + AAA A G A
Sbjct: 305 ---------------AGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAG 349
Query: 125 MAVDKSNPTSKHKSGAVASL 144
++H SGA +L
Sbjct: 350 Q--------NQHPSGATPTL 361
Score = 43.1 bits (100), Expect = 3e-04
Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 45/215 (20%)
Query: 13 GSSSSSTNGSGG---------SGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSG 63
GS++ ++ G GG G P G ++ AA AP S+ P + + G
Sbjct: 177 GSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSM-----DPLQNSHEG 231
Query: 64 IISEPLNKSLRRSRPLSHYSSFGSSGGSGG--------GSMMGGESADKATAAAAAASLL 115
+ N SRP + G GG GG G+ GG A AAAAAA+
Sbjct: 232 YPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291
Query: 116 A-----NGHDLAAAMAVDKSNPTSK------HKSGAVASLLSKAERATELAAEGQLTLQQ 164
A G+ ++A S+P + G A+ LSKA A AA G Q+
Sbjct: 292 AGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKA--AAGSAAGG---FQR 346
Query: 165 FA-------QSTEMLKRVVQEHLPLMSEAGAGLPD 192
FA +T L +++ P+M G P+
Sbjct: 347 FAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPE 381
Score = 31.2 bits (69), Expect = 1.3
Identities = 34/142 (23%), Positives = 51/142 (35%), Gaps = 6/142 (4%)
Query: 5 GGGSQ--DAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKS 62
GGG GG ++S + + GS + G + A A + +P P R+
Sbjct: 317 GGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYG 376
Query: 63 GIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSM----MGGESADKATAAAAAASLLANG 118
G E + S P S ++G + GG MG A AAA+ + A
Sbjct: 377 GSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQ 436
Query: 119 HDLAAAMAVDKSNPTSKHKSGA 140
AM+ PT G+
Sbjct: 437 QRSHPAMSPGTPGPTMGRSQGS 458
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 43.9 bits (102), Expect = 2e-04
Identities = 42/140 (30%), Positives = 50/140 (35%), Gaps = 27/140 (19%)
Query: 5 GGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGI 64
GGG GG S G GG G+ AG A AV AAAA A+ A S
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAG---AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSS- 304
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAA 124
+ Y S GGG MMG A+ + AAA A G A
Sbjct: 305 ---------------AGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAG 349
Query: 125 MAVDKSNPTSKHKSGAVASL 144
++H SGA +L
Sbjct: 350 Q--------NQHPSGATPTL 361
Score = 43.1 bits (100), Expect = 3e-04
Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 45/215 (20%)
Query: 13 GSSSSSTNGSGG---------SGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSG 63
GS++ ++ G GG G P G ++ AA AP S+ P + + G
Sbjct: 177 GSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSM-----DPLQNSHEG 231
Query: 64 IISEPLNKSLRRSRPLSHYSSFGSSGGSGG--------GSMMGGESADKATAAAAAASLL 115
+ N SRP + G GG GG G+ GG A AAAAAA+
Sbjct: 232 YPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291
Query: 116 A-----NGHDLAAAMAVDKSNPTSK------HKSGAVASLLSKAERATELAAEGQLTLQQ 164
A G+ ++A S+P + G A+ LSKA A AA G Q+
Sbjct: 292 AGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKA--AAGSAAGG---FQR 346
Query: 165 FA-------QSTEMLKRVVQEHLPLMSEAGAGLPD 192
FA +T L +++ P+M G P+
Sbjct: 347 FAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPE 381
Score = 31.2 bits (69), Expect = 1.3
Identities = 34/142 (23%), Positives = 51/142 (35%), Gaps = 6/142 (4%)
Query: 5 GGGSQ--DAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKS 62
GGG GG ++S + + GS + G + A A + +P P R+
Sbjct: 317 GGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYG 376
Query: 63 GIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSM----MGGESADKATAAAAAASLLANG 118
G E + S P S ++G + GG MG A AAA+ + A
Sbjct: 377 GSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQ 436
Query: 119 HDLAAAMAVDKSNPTSKHKSGA 140
AM+ PT G+
Sbjct: 437 QRSHPAMSPGTPGPTMGRSQGS 458
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 43.9 bits (102), Expect = 2e-04
Identities = 42/140 (30%), Positives = 50/140 (35%), Gaps = 27/140 (19%)
Query: 5 GGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGI 64
GGG GG S G GG G+ AG A AV AAAA A+ A S
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAG---AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSS- 304
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAA 124
+ Y S GGG MMG A+ + AAA A G A
Sbjct: 305 ---------------AGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAG 349
Query: 125 MAVDKSNPTSKHKSGAVASL 144
++H SGA +L
Sbjct: 350 Q--------NQHPSGATPTL 361
Score = 43.1 bits (100), Expect = 3e-04
Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 45/215 (20%)
Query: 13 GSSSSSTNGSGG---------SGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSG 63
GS++ ++ G GG G P G ++ AA AP S+ P + + G
Sbjct: 177 GSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSM-----DPLQNSHEG 231
Query: 64 IISEPLNKSLRRSRPLSHYSSFGSSGGSGG--------GSMMGGESADKATAAAAAASLL 115
+ N SRP + G GG GG G+ GG A AAAAAA+
Sbjct: 232 YPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291
Query: 116 A-----NGHDLAAAMAVDKSNPTSK------HKSGAVASLLSKAERATELAAEGQLTLQQ 164
A G+ ++A S+P + G A+ LSKA A AA G Q+
Sbjct: 292 AGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKA--AAGSAAGG---FQR 346
Query: 165 FA-------QSTEMLKRVVQEHLPLMSEAGAGLPD 192
FA +T L +++ P+M G P+
Sbjct: 347 FAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPE 381
Score = 31.2 bits (69), Expect = 1.3
Identities = 34/142 (23%), Positives = 51/142 (35%), Gaps = 6/142 (4%)
Query: 5 GGGSQ--DAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKS 62
GGG GG ++S + + GS + G + A A + +P P R+
Sbjct: 317 GGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYG 376
Query: 63 GIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSM----MGGESADKATAAAAAASLLANG 118
G E + S P S ++G + GG MG A AAA+ + A
Sbjct: 377 GSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQ 436
Query: 119 HDLAAAMAVDKSNPTSKHKSGA 140
AM+ PT G+
Sbjct: 437 QRSHPAMSPGTPGPTMGRSQGS 458
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 43.1 bits (100), Expect = 3e-04
Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 28/195 (14%)
Query: 25 SGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRN---------KSGII---SEPLNKS 72
S GP GA ++ + + + + PER + G++ S L++
Sbjct: 2357 SEERGPFRGAEEEDGIYRPSPAGTPLELVRRPERSRSVQDLRAVGEPGLVRRLSLSLSQR 2416
Query: 73 LRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAAMAVDKSNP 132
LRR+ P + ++ + GG G S GG SA + A L L++ + S+
Sbjct: 2417 LRRTPPAQRHPAWEARGGDGESSE-GGSSARGSPVLAMRRRLSFTLERLSSRLQRSGSSE 2475
Query: 133 TSKHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHLPLMSEAGAGLPD 192
S SG L + RAT +EG E L+R+ H L ++AGA P
Sbjct: 2476 DSGGASGRSTPLFGRLRRAT---SEG-----------ESLRRLGLPHNQLAAQAGATTPS 2521
Query: 193 MEAVAG-AEALNGQS 206
E++ A A +G S
Sbjct: 2522 AESLGSEASATSGSS 2536
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 42.0 bits (97), Expect = 7e-04
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 253 ISSGKKKRKRCGMCAPCRRRINCEQCSSCRN------RKTGHQICKFRKCEELKKKPSAA 306
+ G++ R RCG C C+ +C C++C + R Q CK RKC+ L+ PS A
Sbjct: 1146 VKKGRRSR-RCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKA 1204
Score = 32.7 bits (73), Expect = 0.44
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 4 LGGGSQDAGGS-----SSSSTNGSGGSG-SSGPKAGAADKSAVVAAAAPASVADDTPPPE 57
+GGG A S ++++ GS G+G G A +A S+ ++++ +S + + P
Sbjct: 46 VGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPAL 105
Query: 58 RRNKSGI-----ISEPLNKSLRRSRPLSHYSSFGSSGGSGG 93
R G +S + +LRR R + FG SGG GG
Sbjct: 106 LRVGPGFDAALQVSAAIGTNLRRFRAV-----FGESGGGGG 141
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 42.0 bits (97), Expect = 7e-04
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 2 SSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNK 61
S GGGS ++GG S S + GS GSGS+G + + ++ + + N
Sbjct: 235 SGSGGGSSNSGGGSGSQS-GSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 62 SGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGS 95
G + ++S S S SS G+ GGSGGG+
Sbjct: 294 GGSRGDSGSES---SWGSSTGSSSGNHGGSGGGN 324
Score = 33.1 bits (74), Expect = 0.34
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 7 GSQDA-GGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPE-RRNKSGI 64
GSQ GG + G G G +A + AP + PP N G
Sbjct: 152 GSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGA 211
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAAS 113
+++P S+R S ++ SG GG S GG S ++ ++ + ++
Sbjct: 212 VAQPGYGSVRASNQNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSN 260
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 42.0 bits (97), Expect = 7e-04
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 2 SSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNK 61
S GGGS ++GG S S + GS GSGS+G + + ++ + + N
Sbjct: 235 SGSGGGSSNSGGGSGSQS-GSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 62 SGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGS 95
G + ++S S S SS G+ GGSGGG+
Sbjct: 294 GGSRGDSGSES---SWGSSTGSSSGNHGGSGGGN 324
Score = 33.1 bits (74), Expect = 0.34
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 7 GSQDA-GGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPE-RRNKSGI 64
GSQ GG + G G G +A + AP + PP N G
Sbjct: 152 GSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGA 211
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAAS 113
+++P S+R S ++ SG GG S GG S ++ ++ + ++
Sbjct: 212 VAQPGYGSVRASNQNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSN 260
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 42.0 bits (97), Expect = 7e-04
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 2 SSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNK 61
S GGGS ++GG S S + GS GSGS+G + + ++ + + N
Sbjct: 235 SGSGGGSSNSGGGSGSQS-GSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 62 SGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGS 95
G + ++S S S SS G+ GGSGGG+
Sbjct: 294 GGSRGDSGSES---SWGSSTGSSSGNHGGSGGGN 324
Score = 33.1 bits (74), Expect = 0.34
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 7 GSQDA-GGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPE-RRNKSGI 64
GSQ GG + G G G +A + AP + PP N G
Sbjct: 152 GSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGA 211
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAAS 113
+++P S+R S ++ SG GG S GG S ++ ++ + ++
Sbjct: 212 VAQPGYGSVRASNQNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSN 260
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 42.0 bits (97), Expect = 7e-04
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 2 SSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNK 61
S GGGS ++GG S S + GS GSGS+G + + ++ + + N
Sbjct: 235 SGSGGGSSNSGGGSGSQS-GSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293
Query: 62 SGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGS 95
G + ++S S S SS G+ GGSGGG+
Sbjct: 294 GGSRGDSGSES---SWGSSTGSSSGNHGGSGGGN 324
Score = 33.1 bits (74), Expect = 0.34
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 7 GSQDA-GGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPE-RRNKSGI 64
GSQ GG + G G G +A + AP + PP N G
Sbjct: 152 GSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGA 211
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAAS 113
+++P S+R S ++ SG GG S GG S ++ ++ + ++
Sbjct: 212 VAQPGYGSVRASNQNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSN 260
>gi|46519151 ankyrin repeat and KH domain containing 1 isoform 2
[Homo sapiens]
Length = 616
Score = 41.2 bits (95), Expect = 0.001
Identities = 54/194 (27%), Positives = 77/194 (39%), Gaps = 34/194 (17%)
Query: 22 SGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGIISEPLNKSLRRSRPLSH 81
SGG G+S + D +V +APA ++ PPP GI +++R
Sbjct: 5 SGGGGTSFEE----DLDSVAPRSAPAGASE--PPPPGGVGLGI------RTVRLFGEAGP 52
Query: 82 YSSFGSSGGSGGGSMMGGESADKATAAAAAASLL-------ANGHDLAAAMAV------- 127
S GSSGG G GS GG D A AA++L A+G D V
Sbjct: 53 ASGVGSSGGGGSGSGTGG--GDAALDFKLAAAVLRTGGGGGASGSDEDEVSEVESFILDQ 110
Query: 128 -DKSNPTSKHKSGAVASLLSKAERATELAAEGQLTLQQFAQST-----EMLKRVVQEHLP 181
D NP K S S ++ + E Q L+ ++ E+L+R+
Sbjct: 111 EDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAAFADPEVLRRLTSSVSC 170
Query: 182 LMSEAGAGLPDMEA 195
+ EA A L M+A
Sbjct: 171 ALDEAAAALTRMKA 184
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 40.8 bits (94), Expect = 0.002
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 5 GGGSQDAGGSSSSSTNGSGGSGSSGPK---AGAADKSAVVAAAAPASVADDTPPPERRNK 61
GGG AGG SS G GG G+ G A AA +A AAA A++ + PP R
Sbjct: 78 GGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRP 137
Query: 62 SGIISEP 68
+ P
Sbjct: 138 DVLFKAP 144
Score = 28.9 bits (63), Expect = 6.4
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 86 GSSGGS--GGGSMMGGESADKATAAAAAASLLA 116
GSSGG GGG GG + A AAAAAA+ A
Sbjct: 87 GSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAA 119
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 40.8 bits (94), Expect = 0.002
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 24/141 (17%)
Query: 3 SLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKS 62
++ G + A +++++ G+GG G P A AA + VAAAA A+ A
Sbjct: 34 NMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAA------------ 81
Query: 63 GIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLA 122
+ + R L + + + G + S GE+ A AAAAAA+ A A
Sbjct: 82 --------AAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAA----AA 129
Query: 123 AAMAVDKSNPTSKHKSGAVAS 143
AA A P +GA A+
Sbjct: 130 AAAASSSGGPGPAGPAGAEAA 150
Score = 36.6 bits (83), Expect = 0.031
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 60 NKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGG-------SMMGGESADKATAAAAAA 112
N G++++ LNK++ + + ++ ++ G+GGG + GG + A AAAAAA
Sbjct: 22 NGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAA 81
Query: 113 -------SLLANGHDLAAAMAVDKSNPTSKHKSGAVASLLSKAERATELAA 156
+L+A+ LA A S+ + A A+ + A A AA
Sbjct: 82 AAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAA 132
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 40.0 bits (92), Expect = 0.003
Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 7 GSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGIIS 66
GS+ G++S S G+ SG GA D VA P + PPP +
Sbjct: 8 GSKGGHGAASPSEKGAHPSG------GADD----VAKKPPPAPQQPPPPPAPHPQQHPQQ 57
Query: 67 EPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAAM 125
P N++ H GG GGG SA A AAAAA+S + L A+
Sbjct: 58 HPQNQA--------HGKGGHRGGGGGGGKSSSSSSASAAAAAAAASSSASCSRRLGRAL 108
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 256 GKKKRK-RCGMCAPCRRRINCEQCSSCRNR------KTGHQICKFRKCEELKKKPSAALE 308
GKK R RCG C C R +C C +C ++ T Q C +RKC++++ + L
Sbjct: 958 GKKMRMARCGHCRGCLRVQDCGSCVNCLDKPKFGGPNTKKQCCVYRKCDKIEARKMERLA 1017
Query: 309 K 309
K
Sbjct: 1018 K 1018
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
Query: 17 SSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTP--PPERRNKSGIISEPLNKSLR 74
S G GG G G A S + A + A T + + S+PL+ L
Sbjct: 680 SPQGGGGGGGGGGGLHVAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLS 739
Query: 75 RSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAAMAVDKSN--- 131
S H + G GG GGG+ GG SA SLL G DL A + N
Sbjct: 740 ASPRDKHPGNGGGGGGGGGGAGGGGPSASN--------SLLYTG-DLEALQRLQAGNVVL 790
Query: 132 PTSKHKSGAVASLLSKAER 150
P +G +A+ + A+R
Sbjct: 791 PLVHRVTGTLAATSTAAQR 809
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
Query: 17 SSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTP--PPERRNKSGIISEPLNKSLR 74
S G GG G G A S + A + A T + + S+PL+ L
Sbjct: 661 SPQGGGGGGGGGGGLHVAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLS 720
Query: 75 RSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHDLAAAMAVDKSN--- 131
S H + G GG GGG+ GG SA SLL G DL A + N
Sbjct: 721 ASPRDKHPGNGGGGGGGGGGAGGGGPSASN--------SLLYTG-DLEALQRLQAGNVVL 771
Query: 132 PTSKHKSGAVASLLSKAER 150
P +G +A+ + A+R
Sbjct: 772 PLVHRVTGTLAATSTAAQR 790
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 7 GSQD--AGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGI 64
GS+D AG + + G GS+ P +GAA +A AA PA PP +RN G
Sbjct: 95 GSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLG- 153
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSS 88
S PL+ +R R +H G+S
Sbjct: 154 -SSPLH-PVRLGRVRAHAGPAGTS 175
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 7 GSQD--AGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRNKSGI 64
GS+D AG + + G GS+ P +GAA +A AA PA PP +RN G
Sbjct: 95 GSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLG- 153
Query: 65 ISEPLNKSLRRSRPLSHYSSFGSS 88
S PL+ +R R +H G+S
Sbjct: 154 -SSPLH-PVRLGRVRAHAGPAGTS 175
>gi|21071067 TBP-associated factor 5 [Homo sapiens]
Length = 800
Score = 39.7 bits (91), Expect = 0.004
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 26/162 (16%)
Query: 6 GGSQDAGGSSSSSTNGSGG----SGSSGPKAGAADKSAVVAAAAPA-------SVADDTP 54
G + +GG++++ NG GG S S+G G + V+AAAPA + D
Sbjct: 31 GAGEGSGGTTNNGPNGGGGNVAASSSTGGDGGTPKPTVAVSAAAPAGAAPVPAAAPDAGA 90
Query: 55 PPERRNKSGIIS-------EPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESA----D 103
P +R+ ++ ++LRR L + G SG G G E
Sbjct: 91 PHDRQTLLAVLQFLRQSKLREAEEALRREAGLLEEAVAG-SGAPGEVDSAGAEVTSALLS 149
Query: 104 KATAAA---AAASLLANGHDLAAAMAVDKSNPTSKHKSGAVA 142
+ TA+A AA G A ++ S P + K G+VA
Sbjct: 150 RVTASAPGPAAPDPPGTGASGATVVSGSASGPAAPGKVGSVA 191
>gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo
sapiens]
Length = 586
Score = 39.7 bits (91), Expect = 0.004
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 255 SGKKKRKRCGMCAPCRRRINCEQCSSCRNR-KTG-----HQICKFRKCEELKKK 302
+ +++ ++CG CA C RR++C +C C ++ K G Q C++R+C + K
Sbjct: 307 TNRRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMK 360
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 259 KRKRCGMCAPCRRRINCEQCSSCRNRKTGHQICK--FRKCE 297
KR CG CA C+ +C CS+C + H + F KCE
Sbjct: 172 KRVGCGECAACQVTEDCGACSTCL-LQLPHDVASGLFCKCE 211
>gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Homo
sapiens]
Length = 556
Score = 39.7 bits (91), Expect = 0.004
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 255 SGKKKRKRCGMCAPCRRRINCEQCSSCRNR-KTG-----HQICKFRKCEELKKK 302
+ +++ ++CG CA C RR++C +C C ++ K G Q C++R+C + K
Sbjct: 281 TNRRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMK 334
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.125 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,023,142
Number of Sequences: 37866
Number of extensions: 631006
Number of successful extensions: 8820
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 5615
Number of HSP's gapped (non-prelim): 2229
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.