Guide to the Human Genome
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Name: SPEG Sequence: fasta or formatted (3267aa) NCBI GI: 157785645
Description:

SPEG complex locus

Referenced in:

Cardiovascular System

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6        312           3
 C cysteine            1.5         49           1
 D aspartate           3.6        119           3
 E glutamate           7.9        257           4
 F phenylalanine       2.2         73           2
 G glycine             7.7        252           3
 H histidine           2.0         66           2
 I isoleucine          2.0         65           2
 K lysine              3.0         98           2
 L leucine             9.4        306           3
 M methionine          1.0         32           1
 N asparagine          1.3         41           1
 P proline            10.8        352           3
 Q glutamine           4.4        144           2
 R arginine            9.4        308           4
 S serine              9.6        312           4
 T threonine           5.3        174           3
 V valine              6.6        216           3
 W tryptophan          1.1         35           2
 Y tyrosine            1.7         56           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SPEG complex locus 
OBSCN                 0.066   obscurin, cytoskeletal calmodulin and titin-interac...
DAPK1                 0.028   death-associated protein kinase 1 
TTN                   0.028   titin isoform N2-A 
DAPK2                 0.027   death-associated kinase 2 
MYLK                  0.027   myosin light chain kinase isoform 1 
MYLK                  0.027   myosin light chain kinase isoform 2 
DAPK3                 0.026   death-associated protein kinase 3 
TRIO                  0.025   triple functional domain (PTPRF interacting) 
MYLK3                 0.025   myosin light chain kinase 3 
MYLK                  0.025   myosin light chain kinase isoform 3A 
KALRN                 0.024   kalirin, RhoGEF kinase isoform 1 
KALRN                 0.024   kalirin, RhoGEF kinase isoform 3 
MYLK4                 0.024   myosin light chain kinase family, member 4 
TTN                   0.023   titin isoform novex-2 
TTN                   0.023   titin isoform novex-1 
TTN                   0.023   titin isoform N2-B 
MYLK2                 0.023   skeletal myosin light chain kinase 
STK17A                0.022   serine/threonine kinase 17a 
STK17B                0.022   serine/threonine kinase 17B 
MYLK                  0.022   myosin light chain kinase isoform 3B 
OBSL1                 0.021   obscurin-like 1 
CAMK1D                0.018   calcium/calmodulin-dependent protein kinase ID isofor...
CAMK1D                0.018   calcium/calmodulin-dependent protein kinase ID isofo...
PSKH1                 0.018   protein serine kinase H1 
CAMK2G                0.018   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.018   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.018   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.018   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.018   calcium/calmodulin-dependent protein kinase II gamma...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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