Guide to the Human Genome
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Name: CXXC4 Sequence: fasta or formatted (198aa) NCBI GI: 13376816
Description:

CXXC finger 4

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         22           3
 C cysteine            6.6         13           1
 D aspartate           1.5          3           1
 E glutamate           5.1         10           2
 F phenylalanine       3.5          7           2
 G glycine             8.1         16           2
 H histidine           3.0          6           2
 I isoleucine          3.5          7           1
 K lysine              7.1         14           3
 L leucine             7.1         14           1
 M methionine          2.5          5           1
 N asparagine          5.1         10           1
 P proline             8.1         16           2
 Q glutamine           2.5          5           1
 R arginine            6.1         12           1
 S serine             10.6         21           8
 T threonine           4.0          8           1
 V valine              4.0          8           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CXXC finger 4 
CXXC5                 0.296   CXXC finger 5 
TET1                  0.157   CXXC finger 6 
MLL                   0.049   myeloid/lymphoid or mixed-lineage leukemia protein [...
MLL4                  0.041   myeloid/lymphoid or mixed-lineage leukemia 4 
CXXC1                 0.034   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.034   CXXC finger 1 (PHD domain) isoform 2 
MBD1                  0.031   methyl-CpG binding domain protein 1 isoform 2 
MBD1                  0.031   methyl-CpG binding domain protein 1 isoform PCM1 [Ho...
MBD1                  0.031   methyl-CpG binding domain protein 1 isoform 1 
DNMT1                 0.028   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.028   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
EGLN1                 0.028   egl nine homolog 1 
FBXL19                0.026   F-box and leucine-rich repeat protein 19 
DMRTA1                0.023   DMRT-like family A1 
MEX3C                 0.023   ring finger and KH domain containing 2 
SLC2A9                0.021   solute carrier family 2, member 9 protein isoform 2 ...
SLC2A9                0.021   solute carrier family 2, member 9 protein isoform 1 ...
MEX3B                 0.021   mex-3 homolog B 
FOXF2                 0.021   forkhead box F2 
LTBP2                 0.018   latent transforming growth factor beta binding protei...
ZNF703                0.018   zinc finger protein 703 
MBD1                  0.018   methyl-CpG binding domain protein 1 isoform 4 
MBD1                  0.018   methyl-CpG binding domain protein 1 isoform 3 [Homo...
LOC100133142          0.018   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.018   PREDICTED: similar to zinc finger protein 208 [Homo...
MED13L                0.018   mediator complex subunit 13-like 
PLXNA2                0.015   plexin A2 
KDM2A                 0.015   F-box and leucine-rich repeat protein 11 
ELN                   0.015   elastin isoform e precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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