Guide to the Human Genome
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Name: TET1 Sequence: fasta or formatted (2136aa) NCBI GI: 156139122
Description:

CXXC finger 6

Referenced in:

Hematopoiesis and Erythrocytes
Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6        120           4
 C cysteine            2.3         49           1
 D aspartate           4.1         88           2
 E glutamate           6.9        147           3
 F phenylalanine       2.7         58           2
 G glycine             5.0        106           2
 H histidine           3.1         66           2
 I isoleucine          3.9         84           2
 K lysine              8.1        173           4
 L leucine             8.0        170           2
 M methionine          1.5         33           2
 N asparagine          5.8        123           2
 P proline             8.0        171           2
 Q glutamine           5.1        110           2
 R arginine            3.8         82           2
 S serine             10.4        222           4
 T threonine           7.0        150           3
 V valine              6.3        135           3
 W tryptophan          0.6         13           1
 Y tyrosine            1.7         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CXXC finger 6 
TET2                  0.116   tet oncogene family member 2 isoform a 
TET3                  0.112   tet oncogene family member 3 
CXXC5                 0.014   CXXC finger 5 
CXXC4                 0.014   CXXC finger 4 
MLL                   0.006   myeloid/lymphoid or mixed-lineage leukemia protein [...
CXXC1                 0.006   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.006   CXXC finger 1 (PHD domain) isoform 2 
DNMT1                 0.005   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.005   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
MAP4                  0.005   microtubule-associated protein 4 isoform 5 
MAP4                  0.005   microtubule-associated protein 4 isoform 4 
MAP4                  0.005   microtubule-associated protein 4 isoform 2 
MAP4                  0.005   microtubule-associated protein 4 isoform 1 
KIAA1211              0.005   hypothetical protein LOC57482 
SRRM2                 0.005   splicing coactivator subunit SRm300 
MUC2                  0.004   mucin 2 precursor 
MUC17                 0.004   mucin 17 
NCOR2                 0.004   nuclear receptor co-repressor 2 isoform 1 
MUC7                  0.004   mucin 7, secreted precursor 
MUC7                  0.004   mucin 7, secreted precursor 
MUC7                  0.004   mucin 7, secreted precursor 
PWWP2A                0.004   PWWP domain containing 2A isoform b 
MBD1                  0.004   methyl-CpG binding domain protein 1 isoform 2 
MBD1                  0.004   methyl-CpG binding domain protein 1 isoform PCM1 [Ho...
MBD1                  0.004   methyl-CpG binding domain protein 1 isoform 1 
MUC3A                 0.004   PREDICTED: mucin 3A, intestinal 
SRCAP                 0.004   Snf2-related CBP activator protein 
RBBP6                 0.004   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.004   retinoblastoma-binding protein 6 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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