Guide to the Human Genome
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Name: C4orf40 Sequence: fasta or formatted (219aa) NCBI GI: 156071476
Description:

hypothetical protein LOC401137

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.1         44           4
 C cysteine            0.9          2           1
 D aspartate           2.3          5           2
 E glutamate           6.8         15           2
 F phenylalanine       4.1          9           2
 G glycine             5.0         11           1
 H histidine           1.8          4           1
 I isoleucine          3.2          7           1
 K lysine              1.4          3           1
 L leucine             6.4         14           3
 M methionine          0.5          1           1
 N asparagine          3.2          7           1
 P proline            20.5         45           3
 Q glutamine           1.4          3           1
 R arginine            3.7          8           2
 S serine              4.1          9           1
 T threonine           4.1          9           1
 V valine              5.9         13           1
 W tryptophan          0.9          2           1
 Y tyrosine            3.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC401137 
KRTAP4-6              0.120   PREDICTED: keratin associated protein 4.6 
KRTAP4-9              0.115   PREDICTED: keratin associated protein 4-9 
COL6A3                0.099   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.099   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.099   alpha 3 type VI collagen isoform 4 precursor 
SAMD1                 0.090   sterile alpha motif domain containing 1 
KIAA0754              0.090   hypothetical protein LOC643314 
AMOT                  0.085   angiomotin isoform 2 
AMOT                  0.085   angiomotin isoform 1 
FLJ22184              0.083   PREDICTED: hypothetical protein FLJ22184 
TMPRSS13              0.081   transmembrane protease, serine 13 
PCLO                  0.079   piccolo isoform 2 
PCLO                  0.079   piccolo isoform 1 
FLJ22184              0.079   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.079   PREDICTED: hypothetical protein LOC80164 
WIPF3                 0.074   WAS/WASL interacting protein family, member 3 [Homo...
FAM48B1               0.074   hypothetical protein LOC100130302 
MLL2                  0.069   myeloid/lymphoid or mixed-lineage leukemia 2 
CASKIN1               0.065   CASK interacting protein 1 
CDKN1C                0.065   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.065   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.065   cyclin-dependent kinase inhibitor 1C isoform a 
BCORL1                0.062   BCL6 co-repressor-like 1 
SALL3                 0.062   sal-like 3 
EIF3F                 0.062   eukaryotic translation initiation factor 3, subunit 5...
MAZ                   0.060   MYC-associated zinc finger protein isoform 2 
MAZ                   0.060   MYC-associated zinc finger protein isoform 1 
LOC727838             0.060   PREDICTED: similar to cancer/testis antigen family ...
TAF4                  0.060   TBP-associated factor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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