Guide to the Human Genome
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Name: AMOT Sequence: fasta or formatted (675aa) NCBI GI: 19111150
Description:

angiomotin isoform 2

Referenced in:

Cardiovascular System

Other entries for this name:
alt prot [1084aa] angiomotin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.3        117           6
 C cysteine            1.0          7           1
 D aspartate           3.1         21           2
 E glutamate           9.5         64           4
 F phenylalanine       0.7          5           1
 G glycine             2.8         19           2
 H histidine           1.5         10           1
 I isoleucine          4.0         27           2
 K lysine              5.8         39           3
 L leucine             7.6         51           2
 M methionine          2.4         16           1
 N asparagine          2.8         19           1
 P proline             7.6         51           2
 Q glutamine           5.8         39           2
 R arginine            6.2         42           2
 S serine              7.7         52           3
 T threonine           6.5         44           3
 V valine              5.8         39           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   angiomotin isoform 2 
AMOT                  1.000   angiomotin isoform 1 
AMOTL1                0.420   angiomotin like 1 
AMOTL2                0.292   angiomotin like 2 
BAT2D1                0.050   HBxAg transactivated protein 2 
LDB3                  0.050   LIM domain binding 3 isoform 1 
FAM48B1               0.047   hypothetical protein LOC100130302 
KRTAP4-6              0.045   PREDICTED: keratin associated protein 4.6 
SRCAP                 0.045   Snf2-related CBP activator protein 
CCDC88A               0.044   coiled-coil domain containing 88A isoform 2 
BCORL1                0.044   BCL6 co-repressor-like 1 
KRTAP4-9              0.043   PREDICTED: keratin associated protein 4-9 
CCDC88A               0.042   coiled-coil domain containing 88A isoform 1 
CDKN1C                0.042   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.042   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.042   cyclin-dependent kinase inhibitor 1C isoform a 
KIAA0754              0.039   hypothetical protein LOC643314 
LDB3                  0.038   LIM domain binding 3 isoform 2 
SAMD1                 0.037   sterile alpha motif domain containing 1 
MUC7                  0.037   mucin 7, secreted precursor 
MUC7                  0.037   mucin 7, secreted precursor 
MUC7                  0.037   mucin 7, secreted precursor 
CCDC88C               0.036   DVL-binding protein DAPLE 
SNAP91                0.035   synaptosomal-associated protein, 91kDa homolog 
TAF4                  0.035   TBP-associated factor 4 
MUC17                 0.035   mucin 17 
LOC100294420          0.034   PREDICTED: similar to mucin 2 
CENPE                 0.034   centromere protein E 
TPRX1                 0.033   tetra-peptide repeat homeobox 
MUC2                  0.033   mucin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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