Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMPRSS13 Sequence: fasta or formatted (567aa) NCBI GI: 116256363
Description:

transmembrane protease, serine 13

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         55           2
 C cysteine            3.4         19           1
 D aspartate           3.9         22           2
 E glutamate           4.2         24           2
 F phenylalanine       2.6         15           2
 G glycine             7.6         43           2
 H histidine           2.6         15           1
 I isoleucine          4.1         23           3
 K lysine              3.7         21           2
 L leucine             7.6         43           3
 M methionine          1.2          7           2
 N asparagine          2.5         14           2
 P proline             7.2         41           2
 Q glutamine           4.4         25           2
 R arginine            6.9         39           1
 S serine             12.0         68           3
 T threonine           6.5         37           2
 V valine              4.9         28           2
 W tryptophan          2.3         13           1
 Y tyrosine            2.6         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protease, serine 13 
TMPRSS3               0.221   transmembrane protease, serine 3 isoform 1 
TMPRSS2               0.220   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.220   transmembrane protease, serine 2 isoform 2 
TMPRSS4               0.208   transmembrane protease, serine 4 isoform 1 
TMPRSS4               0.206   transmembrane protease, serine 4 isoform 3 
TMPRSS5               0.191   transmembrane protease, serine 5 
HPN                   0.180   hepsin 
HPN                   0.180   hepsin 
KLKB1                 0.168   plasma kallikrein B1 precursor 
PRSS7                 0.164   enterokinase precursor 
TMPRSS6               0.163   transmembrane protease, serine 6 
TMPRSS7               0.160   transmembrane protease, serine 7 
PRSS36                0.156   protease, serine, 36 
F11                   0.154   coagulation factor XI precursor 
TPSG1                 0.153   transmembrane tryptase preproprotein 
TMPRSS11E             0.152   transmembrane protease, serine 11E 
TMPRSS11E2            0.152   transmembrane protease, serine 11E2 
PRSS21                0.150   testisin isoform 2 
PRSS8                 0.149   prostasin preproprotein 
PRSS21                0.149   testisin isoform 1 
CORIN                 0.149   corin 
TMPRSS9               0.149   transmembrane protease, serine 9 
ST14                  0.142   matriptase 
PRSS12                0.142   neurotrypsin precursor 
PLG                   0.140   plasminogen 
TMPRSS11D             0.140   transmembrane protease, serine 11D 
TPSB2                 0.139   tryptase beta 2 precursor 
TPSAB1                0.139   tryptase alpha/beta 1 precursor 
PRSS27                0.138   marapsin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press