Guide to the Human Genome
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Name: CDKN1C Sequence: fasta or formatted (305aa) NCBI GI: 169790903
Description:

cyclin-dependent kinase inhibitor 1C isoform b

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt mRNA [305aa] cyclin-dependent kinase inhibitor 1C isoform b
alt prot [316aa] cyclin-dependent kinase inhibitor 1C isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.7         63           3
 C cysteine            1.0          3           1
 D aspartate           3.9         12           1
 E glutamate           5.9         18           2
 F phenylalanine       2.0          6           2
 G glycine             5.6         17           1
 H histidine           0.7          2           1
 I isoleucine          1.0          3           1
 K lysine              2.0          6           2
 L leucine             7.5         23           3
 M methionine          0.7          2           1
 N asparagine          1.3          4           1
 P proline            18.0         55           3
 Q glutamine           4.6         14           2
 R arginine            6.6         20           1
 S serine              6.9         21           2
 T threonine           2.3          7           1
 V valine              8.2         25           1
 W tryptophan          0.7          2           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin-dependent kinase inhibitor 1C isoform b [Hom... 
CDKN1C                1.000   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                1.000   cyclin-dependent kinase inhibitor 1C isoform a 
TPRX1                 0.120   tetra-peptide repeat homeobox 
C15orf39              0.111   hypothetical protein LOC56905 
BCORL1                0.109   BCL6 co-repressor-like 1 
DGKK                  0.108   diacylglycerol kinase kappa 
EIF3F                 0.096   eukaryotic translation initiation factor 3, subunit 5...
BAT2D1                0.094   HBxAg transactivated protein 2 
FAM48B1               0.091   hypothetical protein LOC100130302 
AMOT                  0.091   angiomotin isoform 2 
AMOT                  0.091   angiomotin isoform 1 
FMNL1                 0.091   formin-like 1 
GGN                   0.089   gametogenetin 
SAMD1                 0.089   sterile alpha motif domain containing 1 
CDKN1B                0.085   cyclin-dependent kinase inhibitor 1B 
RALGDS                0.084   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.084   ral guanine nucleotide dissociation stimulator isof...
SRCAP                 0.080   Snf2-related CBP activator protein 
PRR12                 0.080   proline rich 12 
TAF4                  0.080   TBP-associated factor 4 
KPRP                  0.079   keratinocyte proline-rich protein 
KAT2A                 0.077   general control of amino acid synthesis 5-like 2 [H...
RAPH1                 0.075   Ras association and pleckstrin homology domains 1 is...
RELA                  0.074   v-rel reticuloendotheliosis viral oncogene homolog ...
RELA                  0.074   v-rel reticuloendotheliosis viral oncogene homolog ...
NACA                  0.074   nascent polypeptide-associated complex alpha subuni...
LDB3                  0.072   LIM domain binding 3 isoform 1 
TBC1D10B              0.072   TBC1 domain family, member 10B 
SNAP91                0.070   synaptosomal-associated protein, 91kDa homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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