Guide to the Human Genome
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Name: KIAA1486 Sequence: fasta or formatted (653aa) NCBI GI: 153792764
Description:

hypothetical protein LOC57624

Referenced in:

Myosin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         38           3
 C cysteine            1.5         10           1
 D aspartate           5.2         34           3
 E glutamate           6.3         41           4
 F phenylalanine       1.8         12           1
 G glycine             6.1         40           2
 H histidine           3.1         20           2
 I isoleucine          1.8         12           1
 K lysine              6.1         40           2
 L leucine             7.5         49           2
 M methionine          2.1         14           2
 N asparagine          2.6         17           1
 P proline            12.4         81           4
 Q glutamine           3.1         20           2
 R arginine            6.4         42           3
 S serine             15.2         99           3
 T threonine           5.7         37           1
 V valine              4.9         32           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57624 
LOC100293817          0.934   PREDICTED: similar to hCG1811893 
MYO16                 0.255   myosin heavy chain Myr 8 
C7orf51               0.141   hypothetical protein FLJ37538 
KDM6B                 0.029   lysine (K)-specific demethylase 6B 
MAGEC1                0.028   melanoma antigen family C, 1 
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.025   PREDICTED: hypothetical protein LOC80164 
WIPF1                 0.025   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.025   WAS/WASL interacting protein family, member 1 
SRRM1                 0.025   serine/arginine repetitive matrix 1 
NACA                  0.024   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
ATN1                  0.022   atrophin-1 
ATN1                  0.022   atrophin-1 
APC                   0.022   adenomatous polyposis coli 
APC                   0.022   adenomatous polyposis coli 
APC                   0.022   adenomatous polyposis coli 
RAPH1                 0.022   Ras association and pleckstrin homology domains 1 is...
POM121C               0.022   POM121 membrane glycoprotein (rat)-like 
SRRM2                 0.021   splicing coactivator subunit SRm300 
CASKIN1               0.021   CASK interacting protein 1 
PELP1                 0.020   proline, glutamic acid and leucine rich protein 1 [...
MUC6                  0.020   mucin 6, gastric 
KIAA1522              0.020   hypothetical protein LOC57648 
YLPM1                 0.020   YLP motif containing 1 
SRCAP                 0.019   Snf2-related CBP activator protein 
POM121                0.019   nuclear pore membrane protein 121 
SFPQ                  0.018   splicing factor proline/glutamine rich (polypyrimidin...
PRG4                  0.018   proteoglycan 4 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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