Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: POM121 Sequence: fasta or formatted (984aa) NCBI GI: 26051278
Description:

nuclear pore membrane protein 121

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8        126           3
 C cysteine            0.4          4           1
 D aspartate           1.7         17           2
 E glutamate           2.8         28           3
 F phenylalanine       5.8         57           2
 G glycine             7.9         78           2
 H histidine           0.9          9           2
 I isoleucine          2.2         22           2
 K lysine              4.2         41           2
 L leucine             5.9         58           2
 M methionine          0.8          8           1
 N asparagine          2.2         22           1
 P proline            13.2        130           4
 Q glutamine           4.1         40           1
 R arginine            2.8         28           3
 S serine             17.1        168           4
 T threonine          11.3        111           4
 V valine              3.0         30           2
 W tryptophan          0.2          2           1
 Y tyrosine            0.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear pore membrane protein 121 
POM121C               0.971   POM121 membrane glycoprotein (rat)-like 
LOC100288540          0.819   PREDICTED: hypothetical protein XP_002342775 
LOC100292653          0.348   PREDICTED: similar to hCG1998564 
POM121L2              0.308   POM121 membrane glycoprotein-like 2 
C15orf2               0.082   hypothetical protein LOC23742 
LOC729915             0.071   PREDICTED: similar to Putative POM121-like protein ...
LOC100133280          0.071   PREDICTED: similar to Putative POM121-like protein ...
LOC100294020          0.066   PREDICTED: similar to POM121-like 1, partial 
POMZP3                0.064   POMZP3 fusion protein isoform 2 
POMZP3                0.064   POMZP3 fusion protein isoform 1 
NUP214                0.060   nucleoporin 214kDa 
MUC2                  0.057   mucin 2 precursor 
NACA                  0.051   nascent polypeptide-associated complex alpha subuni...
MUC6                  0.051   mucin 6, gastric 
MUC5B                 0.048   mucin 5, subtype B, tracheobronchial 
MUC17                 0.047   mucin 17 
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
TRO                   0.043   trophinin isoform 5 
LOC100133756          0.042   PREDICTED: hypothetical protein, partial 
MUC4                  0.042   mucin 4 isoform a 
MUC5AC                0.042   mucin 5AC 
LOC100294420          0.042   PREDICTED: similar to mucin 2 
PRG4                  0.042   proteoglycan 4 isoform B 
PRG4                  0.042   proteoglycan 4 isoform A 
FLJ22184              0.042   PREDICTED: hypothetical protein FLJ22184 
MUC12                 0.040   PREDICTED: mucin 12 
SRCAP                 0.040   Snf2-related CBP activator protein 
FLJ22184              0.040   PREDICTED: hypothetical protein LOC80164 
MUC12                 0.040   PREDICTED: mucin 12, cell surface associated 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press