Guide to the Human Genome
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Name: POM121C Sequence: fasta or formatted (987aa) NCBI GI: 150378545
Description:

POM121 membrane glycoprotein (rat)-like

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6        124           3
 C cysteine            0.4          4           1
 D aspartate           1.7         17           2
 E glutamate           2.7         27           3
 F phenylalanine       5.8         57           2
 G glycine             8.1         80           2
 H histidine           0.8          8           2
 I isoleucine          2.1         21           2
 K lysine              4.4         43           4
 L leucine             5.7         56           2
 M methionine          0.7          7           1
 N asparagine          2.1         21           1
 P proline            13.2        130           4
 Q glutamine           4.3         42           1
 R arginine            2.7         27           3
 S serine             17.2        170           4
 T threonine          12.0        118           4
 V valine              2.9         29           1
 W tryptophan          0.2          2           1
 Y tyrosine            0.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POM121 membrane glycoprotein (rat)-like 
POM121                0.968   nuclear pore membrane protein 121 
LOC100288540          0.821   PREDICTED: hypothetical protein XP_002342775 
LOC100292653          0.341   PREDICTED: similar to hCG1998564 
POM121L2              0.314   POM121 membrane glycoprotein-like 2 
C15orf2               0.087   hypothetical protein LOC23742 
LOC100133280          0.071   PREDICTED: similar to Putative POM121-like protein ...
LOC729915             0.071   PREDICTED: similar to Putative POM121-like protein ...
LOC100294020          0.065   PREDICTED: similar to POM121-like 1, partial 
POMZP3                0.065   POMZP3 fusion protein isoform 2 
POMZP3                0.065   POMZP3 fusion protein isoform 1 
NUP214                0.063   nucleoporin 214kDa 
MUC2                  0.061   mucin 2 precursor 
NACA                  0.052   nascent polypeptide-associated complex alpha subuni...
MUC4                  0.051   mucin 4 isoform a 
MUC5B                 0.050   mucin 5, subtype B, tracheobronchial 
MUC17                 0.050   mucin 17 
MUC6                  0.049   mucin 6, gastric 
LOC100294420          0.049   PREDICTED: similar to mucin 2 
PRG4                  0.048   proteoglycan 4 isoform B 
PRG4                  0.048   proteoglycan 4 isoform A 
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
MUC5AC                0.044   mucin 5AC 
LOC100133756          0.044   PREDICTED: hypothetical protein, partial 
PRG4                  0.043   proteoglycan 4 isoform D 
PRG4                  0.043   proteoglycan 4 isoform C 
SRCAP                 0.043   Snf2-related CBP activator protein 
MUC12                 0.043   PREDICTED: mucin 12 
TRO                   0.043   trophinin isoform 5 
SRRM2                 0.040   splicing coactivator subunit SRm300 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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