Guide to the Human Genome
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Name: MUC6 Sequence: fasta or formatted (2439aa) NCBI GI: 151301154
Description:

mucin 6, gastric

Referenced in:

Mucins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6        161           3
 C cysteine            4.5        110           2
 D aspartate           2.2         54           2
 E glutamate           3.2         77           2
 F phenylalanine       3.1         76           1
 G glycine             5.8        142           2
 H histidine           4.0         98           2
 I isoleucine          3.0         72           2
 K lysine              1.9         46           1
 L leucine             5.8        142           3
 M methionine          1.3         31           1
 N asparagine          2.5         62           2
 P proline            10.1        246           4
 Q glutamine           4.1        100           2
 R arginine            3.4         82           2
 S serine             13.2        323           4
 T threonine          16.9        413           4
 V valine              5.7        140           2
 W tryptophan          0.7         17           1
 Y tyrosine            1.9         47           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mucin 6, gastric 
MUC2                  0.232   mucin 2 precursor 
MUC5B                 0.196   mucin 5, subtype B, tracheobronchial 
LOC100132635          0.185   PREDICTED: similar to mucin 5, partial 
MUC5AC                0.166   mucin 5AC 
LOC100294420          0.157   PREDICTED: similar to mucin 2 
LOC100291118          0.126   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.126   PREDICTED: hypothetical protein XP_002343203 
VWF                   0.106   von Willebrand factor preproprotein 
LOC100133761          0.103   PREDICTED: similar to Mucin-6, partial 
OTOG                  0.097   PREDICTED: otogelin isoform 1 
OTOG                  0.097   PREDICTED: otogelin isoform 2 
OTOG                  0.097   PREDICTED: otogelin isoform 2 
OTOG                  0.097   PREDICTED: otogelin isoform 1 
OTOG                  0.097   PREDICTED: otogelin isoform 2 
OTOG                  0.097   PREDICTED: otogelin isoform 1 
SSPO                  0.091   SCO-spondin 
C12orf64              0.084   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.084   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.084   PREDICTED: hypothetical protein LOC283310 
LOC100293409          0.060   PREDICTED: similar to Mucin-19 
LOC100290309          0.057   PREDICTED: hypothetical protein XP_002348012 
FCGBP                 0.057   Fc fragment of IgG binding protein 
MUC17                 0.055   mucin 17 
LOC100133944          0.051   PREDICTED: similar to Fc fragment of IgG binding pr...
MUC12                 0.051   PREDICTED: mucin 12 
LOC100294501          0.050   PREDICTED: hypothetical protein 
LOC729792             0.050   PREDICTED: hypothetical protein 
LOC729792             0.050   PREDICTED: hypothetical protein 
LOC729792             0.050   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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