Guide to the Human Genome
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Name: SDAD1 Sequence: fasta or formatted (687aa) NCBI GI: 153791300
Description:

SDA1 domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         44           3
 C cysteine            1.2          8           2
 D aspartate           5.4         37           2
 E glutamate           8.6         59           3
 F phenylalanine       4.4         30           2
 G glycine             2.0         14           1
 H histidine           2.3         16           2
 I isoleucine          4.8         33           2
 K lysine             11.8         81           5
 L leucine            10.8         74           2
 M methionine          3.9         27           3
 N asparagine          6.1         42           3
 P proline             3.8         26           2
 Q glutamine           4.8         33           2
 R arginine            5.4         37           2
 S serine              6.3         43           3
 T threonine           4.8         33           2
 V valine              4.7         32           2
 W tryptophan          0.4          3           1
 Y tyrosine            2.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SDA1 domain containing 1 
TNNT2                 0.023   troponin T type 2, cardiac isoform 1 
TNNT2                 0.020   troponin T type 2, cardiac isoform 4 
TNNT2                 0.019   troponin T type 2, cardiac isoform 3 
TNNT2                 0.018   troponin T type 2, cardiac isoform 2 
TCHH                  0.015   trichohyalin 
GNL2                  0.014   guanine nucleotide binding protein-like 2 (nucleolar)...
APP                   0.014   amyloid beta A4 protein isoform c precursor 
APP                   0.014   amyloid beta A4 protein isoform e precursor 
CALD1                 0.014   caldesmon 1 isoform 1 
LOC100133599          0.013   PREDICTED: hypothetical protein 
GPATCH8               0.013   G patch domain containing 8 
INCENP                0.013   inner centromere protein antigens 135/155kDa isofor...
SFRS12                0.012   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.012   splicing factor, arginine/serine-rich 12 isoform b [...
ABCF1                 0.011   ATP-binding cassette, sub-family F, member 1 isoform...
NEFM                  0.011   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.011   neurofilament, medium polypeptide 150kDa isoform 2 ...
RSF1                  0.011   remodeling and spacing factor 1 
ANKRD12               0.011   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.011   ankyrin repeat domain 12 isoform 1 
MNS1                  0.011   meiosis-specific nuclear structural 1 
WDR87                 0.011   NYD-SP11 protein 
CALD1                 0.011   caldesmon 1 isoform 4 
CALD1                 0.011   caldesmon 1 isoform 3 
C2orf77               0.011   hypothetical protein LOC129881 
TOP2A                 0.011   DNA topoisomerase II, alpha isozyme 
LOC100133599          0.011   PREDICTED: hypothetical protein 
LOC283685             0.011   PREDICTED: golgi autoantigen, golgin subfamily a-li...
RNF20                 0.011   ring finger protein 20 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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