Guide to the Human Genome
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Name: NEFM Sequence: fasta or formatted (540aa) NCBI GI: 157738641
Description:

neurofilament, medium polypeptide 150kDa isoform 2

Referenced in:

Neurons

Other entries for this name:
alt prot [916aa] neurofilament, medium polypeptide 150kDa isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         39           2
 C cysteine            0.0          0           0
 D aspartate           2.6         14           1
 E glutamate          25.6        138           6
 F phenylalanine       0.7          4           1
 G glycine             6.9         37           2
 H histidine           1.1          6           1
 I isoleucine          2.6         14           2
 K lysine             17.0         92           3
 L leucine             3.0         16           2
 M methionine          0.7          4           1
 N asparagine          0.6          3           1
 P proline             5.9         32           2
 Q glutamine           2.2         12           2
 R arginine            1.3          7           1
 S serine              7.2         39           2
 T threonine           5.0         27           1
 V valine              9.6         52           3
 W tryptophan          0.0          0           0
 Y tyrosine            0.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurofilament, medium polypeptide 150kDa isoform 2 ... 
NEFM                  1.000   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFH                  0.190   neurofilament, heavy polypeptide 200kDa 
RPGR                  0.104   retinitis pigmentosa GTPase regulator isoform C [Hom...
NEFL                  0.092   neurofilament, light polypeptide 68kDa 
RP1L1                 0.083   retinitis pigmentosa 1-like 1 
TTN                   0.082   titin isoform N2-A 
EIF5B                 0.079   eukaryotic translation initiation factor 5B 
MAP1B                 0.076   microtubule-associated protein 1B 
TRDN                  0.076   triadin 
THOC2                 0.074   THO complex 2 
CALD1                 0.074   caldesmon 1 isoform 1 
LOC100133758          0.072   PREDICTED: hypothetical protein, partial 
INA                   0.071   internexin neuronal intermediate filament protein, a...
ZC3H13                0.069   zinc finger CCCH-type containing 13 
NASP                  0.068   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.068   nuclear autoantigenic sperm protein isoform 1 
SMTNL1                0.066   smoothelin-like 1 
LOC283685             0.066   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.064   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.061   PREDICTED: Putative golgin subfamily A member 6-lik...
MYST3                 0.061   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.061   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.061   MYST histone acetyltransferase (monocytic leukemia)...
LOC727832             0.060   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.060   golgi autoantigen, golgin subfamily a-like 
PELP1                 0.060   proline, glutamic acid and leucine rich protein 1 [...
LOC645202             0.059   PREDICTED: hypothetical protein LOC645202 
TCHH                  0.059   trichohyalin 
MYST4                 0.058   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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