Guide to the Human Genome
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Name: TNNT2 Sequence: fasta or formatted (285aa) NCBI GI: 48255881
Description:

troponin T type 2, cardiac isoform 3

Referenced in:

Muscle

Other entries for this name:
alt prot [295aa] troponin T type 2, cardiac isoform 1
alt prot [288aa] troponin T type 2, cardiac isoform 2
alt prot [282aa] troponin T type 2, cardiac isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         24           2
 C cysteine            0.0          0           0
 D aspartate           5.3         15           2
 E glutamate          23.2         66           5
 F phenylalanine       2.1          6           1
 G glycine             2.5          7           2
 H histidine           1.4          4           1
 I isoleucine          4.2         12           1
 K lysine             11.6         33           4
 L leucine             5.6         16           1
 M methionine          2.1          6           2
 N asparagine          4.6         13           1
 P proline             2.5          7           2
 Q glutamine           4.9         14           2
 R arginine           11.2         32           3
 S serine              2.8          8           1
 T threonine           2.1          6           1
 V valine              3.5         10           2
 W tryptophan          0.7          2           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   troponin T type 2, cardiac isoform 3 
TNNT2                 0.989   troponin T type 2, cardiac isoform 2 
TNNT2                 0.983   troponin T type 2, cardiac isoform 1 
TNNT2                 0.963   troponin T type 2, cardiac isoform 4 
TNNT1                 0.557   troponin T1, skeletal, slow isoform b 
TNNT1                 0.548   troponin T1, skeletal, slow isoform c 
TNNT1                 0.538   troponin T1, skeletal, slow isoform a 
TNNT3                 0.525   troponin T3, skeletal, fast isoform 1 
TNNT3                 0.514   troponin T3, skeletal, fast isoform 4 
TNNT3                 0.514   troponin T3, skeletal, fast isoform 2 
TNNT3                 0.499   troponin T3, skeletal, fast isoform 3 
CALD1                 0.092   caldesmon 1 isoform 1 
RBM25                 0.090   RNA binding motif protein 25 
LOC100133599          0.090   PREDICTED: hypothetical protein 
LOC283767             0.090   golgi autoantigen, golgin subfamily a-like 
TCHH                  0.090   trichohyalin 
LOC100133599          0.088   PREDICTED: hypothetical protein 
LOC645202             0.088   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.088   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC100286959          0.086   PREDICTED: hypothetical protein XP_002343921 
LOC727832             0.086   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.086   PREDICTED: golgi autoantigen, golgin subfamily a-li...
PLEC1                 0.084   plectin 1 isoform 11 
PLEC1                 0.084   plectin 1 isoform 10 
PLEC1                 0.084   plectin 1 isoform 8 
PLEC1                 0.084   plectin 1 isoform 7 
PLEC1                 0.084   plectin 1 isoform 6 
PLEC1                 0.084   plectin 1 isoform 3 
PLEC1                 0.084   plectin 1 isoform 2 
PLEC1                 0.084   plectin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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