Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TNNT2 Sequence: fasta or formatted (282aa) NCBI GI: 48255883
Description:

troponin T type 2, cardiac isoform 4

Referenced in:

Muscle

Other entries for this name:
alt prot [295aa] troponin T type 2, cardiac isoform 1
alt prot [288aa] troponin T type 2, cardiac isoform 2
alt prot [285aa] troponin T type 2, cardiac isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         23           2
 C cysteine            0.0          0           0
 D aspartate           5.3         15           2
 E glutamate          22.7         64           5
 F phenylalanine       2.1          6           1
 G glycine             2.5          7           2
 H histidine           1.4          4           1
 I isoleucine          4.3         12           1
 K lysine             11.7         33           4
 L leucine             5.7         16           1
 M methionine          2.1          6           2
 N asparagine          4.6         13           1
 P proline             2.5          7           2
 Q glutamine           5.3         15           2
 R arginine           11.3         32           3
 S serine              2.8          8           1
 T threonine           2.1          6           1
 V valine              3.2          9           2
 W tryptophan          0.7          2           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   troponin T type 2, cardiac isoform 4 
TNNT2                 0.979   troponin T type 2, cardiac isoform 2 
TNNT2                 0.972   troponin T type 2, cardiac isoform 3 
TNNT2                 0.964   troponin T type 2, cardiac isoform 1 
TNNT1                 0.553   troponin T1, skeletal, slow isoform b 
TNNT1                 0.547   troponin T1, skeletal, slow isoform c 
TNNT1                 0.532   troponin T1, skeletal, slow isoform a 
TNNT3                 0.528   troponin T3, skeletal, fast isoform 1 
TNNT3                 0.513   troponin T3, skeletal, fast isoform 4 
TNNT3                 0.511   troponin T3, skeletal, fast isoform 2 
TNNT3                 0.498   troponin T3, skeletal, fast isoform 3 
LOC100133599          0.096   PREDICTED: hypothetical protein 
LOC100133599          0.089   PREDICTED: hypothetical protein 
CALD1                 0.089   caldesmon 1 isoform 1 
RBM25                 0.089   RNA binding motif protein 25 
LOC645202             0.089   PREDICTED: hypothetical protein LOC645202 
MFAP1                 0.089   microfibrillar-associated protein 1 
LOC727832             0.087   golgi autoantigen, golgin subfamily a-like 
LOC100286959          0.085   PREDICTED: hypothetical protein XP_002343921 
LOC283767             0.083   golgi autoantigen, golgin subfamily a-like 
INCENP                0.081   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.081   inner centromere protein antigens 135/155kDa isofor...
TCHH                  0.081   trichohyalin 
LOC100133758          0.079   PREDICTED: hypothetical protein, partial 
LOC283685             0.079   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.079   PREDICTED: Putative golgin subfamily A member 6-lik...
PELP1                 0.079   proline, glutamic acid and leucine rich protein 1 [...
GIGYF2                0.077   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.077   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.077   GRB10 interacting GYF protein 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press