Guide to the Human Genome
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Name: INCENP Sequence: fasta or formatted (914aa) NCBI GI: 102467242
Description:

inner centromere protein antigens 135/155kDa isoform 2

Referenced in:

Centromere Proteins
Protease Inhibitors

Other entries for this name:
alt prot [918aa] inner centromere protein antigens 135/155kDa isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         78           8
 C cysteine            0.7          6           1
 D aspartate           3.3         30           2
 E glutamate          13.1        120           4
 F phenylalanine       1.1         10           1
 G glycine             2.5         23           1
 H histidine           1.6         15           1
 I isoleucine          2.6         24           2
 K lysine              8.4         77           4
 L leucine             7.9         72           2
 M methionine          1.9         17           1
 N asparagine          2.7         25           2
 P proline             8.2         75           2
 Q glutamine           7.5         69           2
 R arginine           10.8         99           3
 S serine              8.0         73           2
 T threonine           4.9         45           2
 V valine              4.4         40           2
 W tryptophan          0.7          6           1
 Y tyrosine            1.1         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   inner centromere protein antigens 135/155kDa isofor... 
INCENP                0.997   inner centromere protein antigens 135/155kDa isofor...
TCHH                  0.066   trichohyalin 
LOC283767             0.060   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.060   PREDICTED: hypothetical protein LOC645202 
LOC283685             0.059   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC727832             0.058   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.058   PREDICTED: Putative golgin subfamily A member 6-lik...
GIGYF2                0.054   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.054   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.054   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.054   GRB10 interacting GYF protein 2 isoform b 
LOC283685             0.053   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133758          0.051   PREDICTED: hypothetical protein, partial 
LOC100286959          0.051   PREDICTED: hypothetical protein XP_002343921 
MAP7D1                0.050   MAP7 domain containing 1 
LOC100133599          0.049   PREDICTED: hypothetical protein 
EIF3A                 0.049   eukaryotic translation initiation factor 3, subunit 1...
LOC100133220          0.048   PREDICTED: hypothetical protein 
LOC400352             0.048   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.048   PREDICTED: similar to Putative golgin subfamily A m...
LOC100133599          0.046   PREDICTED: hypothetical protein 
CALD1                 0.044   caldesmon 1 isoform 1 
PLEC1                 0.044   plectin 1 isoform 11 
PLEC1                 0.044   plectin 1 isoform 10 
PLEC1                 0.044   plectin 1 isoform 8 
PLEC1                 0.044   plectin 1 isoform 7 
PLEC1                 0.044   plectin 1 isoform 6 
PLEC1                 0.044   plectin 1 isoform 3 
PLEC1                 0.044   plectin 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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