Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TNNT2 Sequence: fasta or formatted (295aa) NCBI GI: 48255877
Description:

troponin T type 2, cardiac isoform 1

Referenced in:

Muscle

Other entries for this name:
alt prot [288aa] troponin T type 2, cardiac isoform 2
alt prot [285aa] troponin T type 2, cardiac isoform 3
alt prot [282aa] troponin T type 2, cardiac isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         24           2
 C cysteine            0.0          0           0
 D aspartate           6.1         18           2
 E glutamate          24.1         71           5
 F phenylalanine       2.0          6           1
 G glycine             2.4          7           2
 H histidine           1.4          4           1
 I isoleucine          4.1         12           1
 K lysine             11.2         33           4
 L leucine             5.4         16           1
 M methionine          2.0          6           2
 N asparagine          4.4         13           1
 P proline             2.4          7           2
 Q glutamine           4.7         14           2
 R arginine           11.2         33           3
 S serine              2.7          8           1
 T threonine           2.0          6           1
 V valine              3.4         10           2
 W tryptophan          1.0          3           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   troponin T type 2, cardiac isoform 1 
TNNT2                 0.944   troponin T type 2, cardiac isoform 3 
TNNT2                 0.935   troponin T type 2, cardiac isoform 2 
TNNT2                 0.917   troponin T type 2, cardiac isoform 4 
TNNT1                 0.526   troponin T1, skeletal, slow isoform c 
TNNT1                 0.526   troponin T1, skeletal, slow isoform b 
TNNT1                 0.508   troponin T1, skeletal, slow isoform a 
TNNT3                 0.499   troponin T3, skeletal, fast isoform 1 
TNNT3                 0.496   troponin T3, skeletal, fast isoform 2 
TNNT3                 0.494   troponin T3, skeletal, fast isoform 4 
TNNT3                 0.479   troponin T3, skeletal, fast isoform 3 
LOC440243             0.097   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC100133599          0.093   PREDICTED: hypothetical protein 
LOC645202             0.093   PREDICTED: hypothetical protein LOC645202 
TCHH                  0.093   trichohyalin 
RBM25                 0.093   RNA binding motif protein 25 
PELP1                 0.092   proline, glutamic acid and leucine rich protein 1 [...
LOC283767             0.092   golgi autoantigen, golgin subfamily a-like 
LOC100286959          0.090   PREDICTED: hypothetical protein XP_002343921 
LOC727832             0.090   golgi autoantigen, golgin subfamily a-like 
LOC100133599          0.088   PREDICTED: hypothetical protein 
LOC283685             0.084   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133758          0.084   PREDICTED: hypothetical protein, partial 
LOC400352             0.084   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.084   PREDICTED: similar to Putative golgin subfamily A m...
CALD1                 0.083   caldesmon 1 isoform 1 
MFAP1                 0.083   microfibrillar-associated protein 1 
LOC283685             0.079   PREDICTED: golgi autoantigen, golgin subfamily a-li...
RPGR                  0.079   retinitis pigmentosa GTPase regulator isoform C [Hom...
GIGYF2                0.077   GRB10 interacting GYF protein 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press