Guide to the Human Genome
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Name: LOC100133599 Sequence: fasta or formatted (275aa) NCBI GI: 239749449
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {245aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.5          4           2
 C cysteine            0.7          2           1
 D aspartate           2.2          6           1
 E glutamate          17.5         48           2
 F phenylalanine       1.8          5           1
 G glycine             2.9          8           1
 H histidine           1.5          4           1
 I isoleucine          2.2          6           1
 K lysine             24.4         67           4
 L leucine             2.5          7           2
 M methionine          1.1          3           1
 N asparagine          2.5          7           1
 P proline             1.1          3           1
 Q glutamine           2.5          7           1
 R arginine           25.8         71           2
 S serine              3.3          9           2
 T threonine           2.9          8           1
 V valine              3.3          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133599          0.481   PREDICTED: hypothetical protein 
LOC100286959          0.258   PREDICTED: hypothetical protein XP_002343921 
LOC100131202          0.238   PREDICTED: hypothetical protein 
RBM25                 0.233   RNA binding motif protein 25 
LOC100131202          0.225   PREDICTED: hypothetical protein 
ZC3H13                0.219   zinc finger CCCH-type containing 13 
LOC100288837          0.211   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100134067          0.198   PREDICTED: hypothetical protein 
SFRS12                0.198   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.198   splicing factor, arginine/serine-rich 12 isoform b [...
PRPF38B               0.188   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
TCHH                  0.184   trichohyalin 
CROP                  0.180   cisplatin resistance-associated overexpressed protei...
CROP                  0.180   cisplatin resistance-associated overexpressed protei...
INCENP                0.167   inner centromere protein antigens 135/155kDa isofor...
LOC100294088          0.167   PREDICTED: hypothetical protein, partial 
ACIN1                 0.165   apoptotic chromatin condensation inducer 1 
LOC283685             0.161   PREDICTED: golgi autoantigen, golgin subfamily a-li...
INCENP                0.159   inner centromere protein antigens 135/155kDa isofor...
RSRC2                 0.157   arginine/serine-rich coiled-coil 2 isoform a 
CDC2L1                0.153   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.153   cell division cycle 2-like 1 (PITSLRE proteins) isof...
EIF5B                 0.153   eukaryotic translation initiation factor 5B 
SFRS11                0.151   splicing factor, arginine/serine-rich 11 
DDX46                 0.151   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
LOC727832             0.149   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.149   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CDC2L1                0.149   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.149   cell division cycle 2-like 1 (PITSLRE proteins) isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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