CALD1 5179

Name: CALD1	Sequence: fasta or formatted (558aa)		NCBI GI: 15149463
Description: caldesmon 1 isoform 4		Referenced in: Cytoskeleton
Other entries for this name: alt prot [532aa] caldesmon 1 isoform 5 alt prot [564aa] caldesmon 1 isoform 3 alt prot [793aa] caldesmon 1 isoform 1 alt prot [538aa] caldesmon 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.8 38 2 C cysteine 0.2 1 1 D aspartate 5.0 28 3 E glutamate 17.2 96 6 F phenylalanine 2.2 12 1 G glycine 5.0 28 2 H histidine 0.7 4 1 I isoleucine 2.3 13 1 K lysine 12.7 71 3 L leucine 5.6 31 1 M methionine 1.1 6 1 N asparagine 3.2 18 1 P proline 4.1 23 1 Q glutamine 5.4 30 2 R arginine 9.3 52 4 S serine 7.3 41 2 T threonine 6.1 34 4 V valine 4.3 24 1 W tryptophan 0.7 4 1 Y tyrosine 0.7 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 caldesmon 1 isoform 4 CALD1 0.968 caldesmon 1 isoform 3 CALD1 0.938 caldesmon 1 isoform 5 CALD1 0.907 caldesmon 1 isoform 2 CALD1 0.668 caldesmon 1 isoform 1 TCHH 0.076 trichohyalin LOC283685 0.075 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC100133758 0.072 PREDICTED: hypothetical protein, partial LOC727832 0.071 golgi autoantigen, golgin subfamily a-like LOC283685 0.069 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC100286959 0.067 PREDICTED: hypothetical protein XP_002343921 LOC645202 0.065 PREDICTED: hypothetical protein LOC645202 LOC283767 0.064 golgi autoantigen, golgin subfamily a-like LOC440243 0.064 PREDICTED: Putative golgin subfamily A member 6-lik... NEXN 0.063 nexilin (F actin binding protein) RPGR 0.062 retinitis pigmentosa GTPase regulator isoform C [Hom... LOC100132816 0.061 PREDICTED: similar to Putative golgin subfamily A m... LOC400352 0.060 PREDICTED: similar to Putative golgin subfamily A m... RBM25 0.060 RNA binding motif protein 25 EIF5B 0.058 eukaryotic translation initiation factor 5B INCENP 0.056 inner centromere protein antigens 135/155kDa isofor... LOC100133599 0.055 PREDICTED: hypothetical protein INCENP 0.054 inner centromere protein antigens 135/155kDa isofor... ZC3H13 0.053 zinc finger CCCH-type containing 13 EIF3A 0.052 eukaryotic translation initiation factor 3, subunit 1... ATRX 0.052 transcriptional regulator ATRX isoform 2 ATRX 0.052 transcriptional regulator ATRX isoform 1 CCDC19 0.052 nasopharyngeal epithelium specific protein 1 SAFB2 0.051 scaffold attachment factor B2 WDR87 0.050 NYD-SP11 protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.