Guide to the Human Genome
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Name: GPATCH8 Sequence: fasta or formatted (1502aa) NCBI GI: 50962882
Description:

G patch domain containing 8

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3        109           7
 C cysteine            1.1         16           1
 D aspartate           6.2         93           3
 E glutamate           7.9        119           6
 F phenylalanine       2.3         34           2
 G glycine             7.7        115           4
 H histidine           4.5         68           2
 I isoleucine          2.8         42           2
 K lysine              8.5        128           5
 L leucine             6.0         90           3
 M methionine          0.9         13           1
 N asparagine          1.9         28           2
 P proline             8.1        122           3
 Q glutamine           4.8         72           3
 R arginine            6.7        101           5
 S serine             14.5        218           4
 T threonine           4.4         66           2
 V valine              2.2         33           2
 W tryptophan          0.3          4           1
 Y tyrosine            2.1         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G patch domain containing 8 
ZNF804A               0.080   zinc finger protein 804A 
ZNF804B               0.075   zinc finger protein 804B 
DSPP                  0.036   dentin sialophosphoprotein preproprotein 
SRRM2                 0.029   splicing coactivator subunit SRm300 
PPIG                  0.028   peptidylprolyl isomerase G 
SFRS4                 0.027   splicing factor, arginine/serine-rich 4 
KIAA1853              0.026   KIAA1853 protein 
LOC100170229          0.025   hypothetical protein LOC100170229 
FLG                   0.025   filaggrin 
RSRC2                 0.024   arginine/serine-rich coiled-coil 2 isoform a 
PRPF4B                0.023   serine/threonine-protein kinase PRP4K 
C2orf16               0.023   hypothetical protein LOC84226 
HRNR                  0.022   hornerin 
SRRM1                 0.022   serine/arginine repetitive matrix 1 
LOC100286959          0.022   PREDICTED: hypothetical protein XP_002343921 
NKTR                  0.022   natural killer-tumor recognition sequence 
SFRS18                0.021   splicing factor, arginine/serine-rich 130 
SFRS18                0.021   splicing factor, arginine/serine-rich 130 
SFRS16                0.021   splicing factor, arginine/serine-rich 16 
CRKRS                 0.021   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.021   Cdc2-related kinase, arginine/serine-rich isoform 1...
SCAF1                 0.019   SR-related CTD-associated factor 1 
AFF4                  0.019   ALL1 fused gene from 5q31 
PRPF38B               0.019   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
ZRANB2                0.019   zinc finger protein 265 isoform 1 
FLJ37078              0.019   hypothetical protein LOC222183 
ZC3H13                0.018   zinc finger CCCH-type containing 13 
RSRC2                 0.018   arginine/serine-rich coiled-coil 2 isoform b 
ATRX                  0.018   transcriptional regulator ATRX isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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